Yersinia similis: BF17_09045
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Entry
BF17_09045 CDS
T03057
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ysi
Yersinia similis
Pathway
ysi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF17_09045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ysi03019
]
BF17_09045
03400 DNA repair and recombination proteins [BR:
ysi03400
]
BF17_09045
Enzymes [BR:
ysi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF17_09045
Messenger RNA biogenesis [BR:
ysi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF17_09045
DNA repair and recombination proteins [BR:
ysi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BF17_09045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AHK19438
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All DBs
Position
1866894..1868729
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AA seq
611 aa
AA seq
DB search
MSTAAVINRELLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLYQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIAL
TATADEATRSDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQPCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREMGHDKLSVYGIGREQTHEHWVSVLRQLIHLG
LLSQNIAQFSALQLTEAARPVLRAELPLQLAVPRIQSLKVRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAL
IRDHVDNNDDE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccgcagcagtgataaacagggaattactggcagtgcaggtattgcgagatact
ttcggttatcagcaatttcggccagggcagcaggagattatcaacgcgacattgtcaggc
caggattgcctggttgtgatgccaaccggcggtggtaaatccttgtgttatcagatcccc
gccttggtgaccgatggtctgacattagtggtctcgccgcttatctctctgatgaaagat
caggttgaccaactgttggcctatggcgtgggcgcaggctgcctaaactcatcgcaaacc
cgcgaacagcaactggcggtgatggacggttgccgcagtgggcagattaaactgttgtat
atcgcgccagagcggttggtgatggagagttttcttgatcagctgtatcaatggcggccc
gccttgctggcagtggatgaagctcactgtatttcccagtgggggcatgatttccgcccg
gaataccgtgctcttggtcagttaaagcagcgttttcctgatctaccggttattgcattg
accgcgacggctgatgaagccactcgcagcgatattgtgcgcctgctgaatctggaccaa
cctctgattcaggtcagtagttttgatcgcccgaatatccgctataccttagttgagaag
tttaaacctctcgatcaactgtggcgttttgtacaagaccagcgcggcaagagtggcatt
atttactgtaatagccgagcgaaagtggaagatacgacagcccgtttgcaaagccgtggc
ttgagtgttgccgcctatcacgctgggctggataacgaacgccgtgcgcaggtacaagag
gctttccagcgcgatgatttacaagtggtggtcgccaccgtagcgtttgggatggggatt
aacaaaccgaacgtccgctttgtcgtgcattttgatatcccgcgaactatcgaatcctac
tatcaggaaacgggccgcgctgggcgcgatggcttaccggccgaggccgtgctgctgtac
gatccggcagatatggcgtggttacgccgttgccttgaagagaaacctgcgggtgctcag
caagatatcgaacgacataaactcaatgcgatgggggcgtttgccgaggcacaaacctgt
cgccgtttggtgctgctcaactattttggtgaaggcaaacagcaaccttgcggtaactgc
gatatctgcctggatccgccgaagcgctacgatggtctggcagatgcgcagaaagcgctc
tcttgcgtttatcgggtggggcaacgctttggcttagggtacatcgttgaggtgctgcgt
ggggcgaataaccagcgtattcgcgagatgggccatgacaagctttcggtgtacggtatt
ggccgtgaacaaacccatgaacactgggtcagtgttttgcgccagttgatccacctgggg
ctgctaagccagaatattgcccagttctctgccttgcaactgactgaagcggcgcgcccg
gtcttacgtgcagagctgccattacaactggcggtaccgcggattcagagcctgaaagtg
cgtagcagtgccaatcagaaatcctatggaggcaattacgatcgtaagttgtttgcgaag
ctgcgcaaactgcgtaagtcgattgctgatgaaggtaatatcccgccttatgtggtgttt
aacgacgcgaccttgctggagatggctgaacagatgcccattaccgccagcgagttgtta
agcgttaatggtgtcggtcagcgtaaactggaacgttttggtgcgccgtttatggccctg
atccgtgatcatgtggataacaacgatgacgaatag
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