Yersinia similis: BF17_09510
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Entry
BF17_09510 CDS
T03057
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ysi
Yersinia similis
Pathway
ysi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF17_09510 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ysi03021
]
BF17_09510 (rpoB)
03400 DNA repair and recombination proteins [BR:
ysi03400
]
BF17_09510 (rpoB)
Enzymes [BR:
ysi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF17_09510 (rpoB)
Transcription machinery [BR:
ysi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF17_09510 (rpoB)
DNA repair and recombination proteins [BR:
ysi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF17_09510 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
AHK19516
UniProt:
A0A0T9RIM3
LinkDB
All DBs
Position
1961641..1965669
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNFTTAQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YVDASTGELICAANMELSLDLLAKLSQSGHKQIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSREQVDYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEAEKLSKLPRERWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaaatttatcgag
caagatcccgaagggcagcacggactagaagcagcattccgttctgtttttcctatccag
agctacagcggcaattcggagctgcaatacgttagctaccgtcttggtgagccagtattc
gacgtcaaagagtgccagatccgtggtgtgacttattcagcaccgctgcgcgttaaactg
cgtctggttatctatgagcgggaagctccggaaggtacggtcaaagacatcaaagaacaa
gaagtctatatgggtgaaattccactcatgaccgaaaatggtacctttgttattaatggt
actgagagggttatcgtatctcagctgcaccgtagtcctggtgtgttctttgacagcgat
aagggtaaaacccattcatcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggttagatttcgagtttgatccgaaagacaacctgtttgtacgtattgaccgt
cgccgtaaattgcctgcaaccatcattctgcgtgcattgaatttcaccactgcacagatc
ctggatctgttctttgagaaagtggtctttgagattcgtgataacaagctgcagatggaa
ttggttccagagcgcctgcgcggtgaaacggcatcctttgatattgaagcgaatggtaaa
gtttacgtcgagaaagcgcgtcgtattactgctcgccatattcgccagcttgaaaaagac
ggcattgatcgcatcgaagtaccggttgaatacattgccggtaaagttgttgcaaaagac
tatgttgatgcgagcaccggtgagctgatctgtgcagctaacatggagctgtcactggat
ttgctggctaagctgagccagtctggccacaagcaaattgaaacgttgttcaccaacgat
ctggatcacggtgcttatatctccgagaccctgcgtgttgacccaaccagcgatcgtctg
agcgccttggttgagatctatcgcatgatgcgccctggtgagccgccaacacgtgaagct
gctgaaaatctgtttgagaatctgttcttctccgaagaccgctatgatttatctgcggtt
ggccggatgaagttcaaccgttctctgttgcgtgatgagatcgaaggttccggtatcctg
agcaaagaagacatcactgaagtgatgaaaaagctcattgatatccgtaacggtagaggc
gaagtggatgatatcgaccacttaggcaaccgtcgtattcgttccgttggcgagatggct
gaaaaccagttccgtgtcggtctagttcgtgttgagcgtgcagttaaagagcgtttgtct
ctgggcgacctcgatactctgatgccgcaggacatgatcaacgccaagcctatttcggct
gcggtgaaagagttctttggttccagccagttgtcccaatttatggaccagaacaacccg
ttgtctgagattacgcataagcgccgtatctctgcattgggtccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtttgatcaactccttgtctgtatatgcacag
actaacgagtatggtttcctggaaacaccttatcgtcgtgtacgtgatggtgtggtgacc
gatgaaattaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggatgatgaaggccgctttttagaagatttggttacttgtcgtagcaaaggc
gaatcaagcctgtttagccgcgagcaagttgactacatggacgtatctactcagcaaatc
gtatccgttggtgcttctctgattccattcttggaacacgatgacgccaaccgtgccttg
atgggtgcgaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgttagtg
ggtactggtatggaacgtgcagtggcggttgactcaggggtaacctctgtagccaaacgt
ggcggtactgttcagtacgtagatgcatcccgtatcgttattaaagttaacgaagatgag
atgtacccaggcgaagcaggcattgatatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccttgtgtgaatctgggtgagccaatcgagcgcggt
gacgtgctggcagatggcccatcgacagacctgggcgaactggcattgggtcagaacatg
cgcgtagcgttcatgccttggaacggctacaacttcgaagactccatcttggtctccgag
cgcgtggtgcaagaagatcgcttcacaaccatccatattcaggaattggcatgtgtgtca
cgcgacaccaagttagggcctgaagagatcactgccgatatcccgaacgtgggtgaagca
gcactctccaaattagatgaatccggtatcgtgtatatcggtgctgaagtgactggcggt
gacattctggttggtaaggtaacgcctaaaggtgaaacccaactgacgccagaagagaaa
ctgttacgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggtgtttctggtacggttatcgacgtacaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcattggaaatcgaagagatgcaactgaagcaggctaagaaagacctg
actgaagagttgcagatcctggaagcgggcttgtttgcacgtatccacgcggtactggtt
tctggtggcatcgaagcagagaagctgagcaagttaccacgtgaacgctggctggaactg
ggcctgaccgacgaagacaagcaaaaccagctggaacagttggcagagcagtacgacgaa
atgaaatccgaattcgagaagaagatggatgccaagcgtcgtaaaattacccaaggcgat
gatctggcacctggtgtgctgaaaatcgtcaaggtgtatctggcggttaaacgtcagatt
caaccgggtgataaaatggccggtcgtcacggtaacaaaggtgttatctctaagattaac
ccaatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattttggaaacccacttagggatggca
gcgaagggtatcggcgagaaaatcaacgccatgctcaagaagcaggaagaagttgccaaa
ctgcgtgagttcattcagaaggcctacgatctgggcgacaacgtttgtcagaaagttgat
ctgagcacctttaccgatgacgaagtactgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgcaacgccagtcttcgatggtgcgacagagaaagaaatcaaggaactgttacag
ctgggtggcctgccaacgtctggtcagattaccttgtttgacggccgtaccggtgagcaa
tttgaacgccaggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gacaagatgcatgcgcgttctaccggttcttatagcttggttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggcgccgcgtacacattgcaagaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggaatgccg
gagtccttcaacgtattgttgaaagaaatccgctctctgggcatcaatatcgagctggaa
gaagagtaa
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integrated database retrieval system
