Yersinia similis: BF17_10375
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Entry
BF17_10375 CDS
T03057
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ysi
Yersinia similis
Pathway
ysi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF17_10375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ysi03019
]
BF17_10375
03016 Transfer RNA biogenesis [BR:
ysi03016
]
BF17_10375
Enzymes [BR:
ysi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BF17_10375
Messenger RNA biogenesis [BR:
ysi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BF17_10375
Transfer RNA biogenesis [BR:
ysi03016
]
Prokaryotic type
tRNA degradation factors
BF17_10375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
HTH_20
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
AHK19659
UniProt:
A0A0T9P7H3
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All DBs
Position
2154899..2157433
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AA seq
844 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQAVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDSRLSFDILIPP
DAICGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPQTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLEELHAMYKVLDQA
RAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEP
ALFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPT
GGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFTGIIASVTGFGF
FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVDAVHMDERK
IDFALVSSTRKPRGEGKTARDKAKNSGQRTLRSNSTGRGSSSGSSRRDGAPAAGGQKRPR
RAKKPVNFEPDSAFRPDAAAAKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKT
TSDQ
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagagaaatatgagtcaccgatccctagc
cgggaatttattttggctcatctcgcgaagcgcgagacacctgccagccgtgaagagctg
gccaatgaacttaatttaaccggtgaagagcctttagaggcgctacgccgtcgtttgcgt
gcgatggagcgtgatgggcaattggtcttcacccgtcgtcagtgctacgccctgccagag
cgtttggatttactgcgcggtacggttattggtcaccgtgatggctatggctttttgcgg
gttgaaggcagtaaagatgatctgtatctctccgcagaacagatgaaaatggcgattcat
ggtgatgtcgtattggcacaagcggttggggctgaccgtaaaggccgccgtgaagcgcgt
atcgtacgtgtattggtcccgaaaaccagccagatcgtgggtcgctactttaccgatgca
ggtacgggctttgttgtaccggatgacagtcgcctgagctttgatatcttgattccacca
gatgctatctgtggtgcgcggatgggctttgtggttgtagtcgaattgactcagcggcca
actcgccgtactaaagcggtcggtaagattgttgaagtacttggcgagaatatgggcacc
agcatggcggtggatatcgcattgcggacccatgaaatcccgcacacctggccacctcag
gttgaaaaacaagtcgcggatctgaaagaacaagtaccggaagaagcgaaaaaggggcgg
gtagatttacgcgatctgcctctggttactattgatggtgaagatgcccgcgacttcgat
gatgcagtgtattgcgagaagaaacgtggcggcggttggcggttgtgggtagcgattgcg
gatgtcagctattatgtgcgtcctcaaactgcattggatgacgaagcccggagccgtggt
aactcggtctacttcccatcgcaagtgataccgatgctgccggaagtgttatcaaacggc
ctttgctcccttaatccgcaggtagaccgcctgtgtatggtgtgcgagatgaccatctct
tcgcagggcaaactctcgtcttataagttctacgaagcggtaatgagctcccatgcccgt
ctgacctatactaaggtgtggcggattatagatggtgaggaatcgctgcgtgagcaatat
aagccactggttccgcatctggaagagctgcacgcgatgtataaagtgctggatcaggcg
cgcgcagaacgaggtggcattgctttcgaaacagaagaagctaaatttatcttcaatgct
gagcggcgcatcgaacgtatcgaaccaacggtacgtaatgatgctcataagctaattgaa
gagtgcatgattctggcgaatatcgcggcggcgcgttttgtggaaaaacacgaagaaccg
gcgttgttccgagtgcatgaccgcccaagcgatgaccatattgtggcattgcgcagtgtg
ctaaatgagttggggctgacattagggggcgggctgaagccacaaccaaaagattattca
gtgttgatggatgaaatttctgaccgccccgatcatgaaatgttgcaaaccatgttgcta
cgttccatgaaacaagcggtttatgatccagaaaaccggggtcactttggtttggcgttg
gcttcttatggccatttcacctcacctattcgtcgttaccctgatttggcaatgcatcgg
gccattaagtaccagttagccaaagagcacggtaatttaaaagatcgctggacacctacg
gggggctggcatagcgatttcgaagatatgctgcaattgggccaacactgctcaatgacc
gagcgccgagcggatgaagcaacccgcgatgtcgctgactggctgaagtgtgactttatg
ctagatcaggtcggtaatgtcttcaccggtattattgccagtgtgacaggctttggtttc
ttcgtgcgtttggatgatctctttatcgatggtctggtgcatgtctccagtctggataac
gattactaccgttacgacaacattggccagcggctgatcggtgaatcttccggtgtggtt
taccggctgggggataccgtggagattcgagtcgatgcggttcatatggatgagcgtaaa
attgactttgctctggtctccagtacccgcaagccacgtggtgaaggcaagaccgcccgt
gataaggcgaaaaatagcggccagcgtacattacgcagtaattcaacaggtcgtggctct
tcatccggctcatcgcgccgtgatggtgcgccagctgcgggtggacaaaaacgtccacgt
cgagctaaaaaaccggtaaacttcgagccggacagtgcgttccgtccagatgctgcggcg
gctaagccagatgataaagccttagctgagaagaaagccaaggcgaaggcaaaaagagcc
tcggctaagaccaaaaaaattgctgcggcgaccaaagccaaacgagcgaagaaaaaaacc
actagcgatcagtaa
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