Yersinia similis: BF17_14955
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Entry
BF17_14955 CDS
T03057
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ysi
Yersinia similis
Pathway
ysi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF17_14955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ysi03019
]
BF17_14955
Enzymes [BR:
ysi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BF17_14955
Messenger RNA biogenesis [BR:
ysi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF17_14955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHK20458
LinkDB
All DBs
Position
3146681..3148036
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AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRNSRPRSQADGQRRPAGPSSRGRSRNPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacgccaattcaacgtcaggcaatccctgtggtactggaaggccgcgat
ttaatggccagtgcgcaaacgggtacgggtaaaaccgctggtttcaccttgccgctattg
caactgcttagccaagatcaacagccaattaagggccgccgtccggtacgggcattgatt
ttaacgccaacccgtgagctggccgcgcagattgacgaaaacgtacagagttatagcaaa
tacctgaaacttcgctcgctggtggtatttggtggcgttagcattaacccgcagatgatg
aaattgcgtggtggcgtcgatattttagtcgcgacccctggccgtttgctggatctggaa
catcaaaacgcggttgatttgtccaaaattgaaattttggtcttggacgaagcggaccgt
atgttggatatgggctttattcacgatatccgccgtgtattagccaaattaccggctaaa
cgtcagaatttgctgttctctgccaccttctctgatgagattaaagggctggccagcaaa
ttgttgcacaacccagcctctgttgaagtggcccgtcgtaacacggcgtcagagcagatc
gctcaaagcgttcactttgtcgataaaaaccgtaagcgtgagttgttgtctcagatgatt
ggtgaaggtaactggcagcaagtgctggtgtttaaccgcacgaagcatggcgcgaaccat
ttagctgaacagttgaataaagacggtattactgcggcggcgatccacggtaataagagt
cagggcgcacgtactcgtgcactggctgattttaaagacggtaaaatccgtgtgctggtg
gcgacggatatcgctgcccgtggtctggatatcgaccagttacctcacgtggttaactat
gaattgccaaacgtcccggaagattacgttcaccgtattggccgtactggccgcgcggaa
cgaaccggggaagcgatttcactggtttgtgtcgatgaacataaactgctgcgtgatatt
gagcgtttattaaaacgtgaaattccacgtatcgcacttgatggctatgagccggatcca
agcattaaagccgatccgattcaaaatggccgtcagggccgtggcgcacaacgtccgggc
atgggccgtggtagcagtgcgggtcgtccgcagaatgggggcggtgcagcaggtcgcggt
gatagccgcaacagccgcccacgcagccaggctgatggtcaacgccgcccggcaggccca
tcgtctcgcggtcgtagccgtaatccaggcgaataa
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