Yersinia similis: BF17_20270
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Entry
BF17_20270 CDS
T03057
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ysi
Yersinia similis
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ysi03019
]
BF17_20270
Enzymes [BR:
ysi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BF17_20270
Messenger RNA biogenesis [BR:
ysi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BF17_20270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
AAA_16
ResIII
AAA_25
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AHK21341
LinkDB
All DBs
Position
complement(4229967..4233854)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSSLTALSTLLGELMLRDQQRIQRRLHGARKINNPEAIQAITHEIEAEVATAMQRVTRR
RAVCPAISYPDNLPVSQKKQDIYNAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGV
IGHTQPRRLAARTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSQHFNNA
PIIEVSGRTYPVEVRYRPIVDDADDVDRDQLQAIFDAVDELGRESAGDILIFMSGEREIR
DTADALIKQNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQ
LTPLGRQLAQLPVDPRLARMVLQAQKSGCVRELMIITSALSIQDPRERPVDKQQASDEKH
RRFADKDSDFLAFVNLWDYLKEQQKALSSAQFRKLCRSDYLNYLRVREWQDIYTQLRQVV
KELGIPVNSVAADYRSVHTAILTGLLSHVGQKDVEKQEFTGARNARFAIFPGSGLFKKPP
KWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHHYSDPHWEKAQGAVMASEKVTLF
GLPIVTERKINYGPIDPLLCRELFIRHGLVEGDWQTRHTFFRTNLKLLAEVEELEHKSRR
RDILVDDETLFNFYDQRIGRDVISARHFDSWWKQASQTKPELLNFEKTMLIKEGANKVNP
LDYPNFWYQGELKLRLSYQFEPGTDADGVTVHIPLPILNQIQEQGFDWQIPGIRRELVVA
LIKSLPKPVRRNFVPAPNYADAFLARVTPLETGLLEALERELRRMTGVTVSRDSWQWDQV
PDHLKMTFRVLDDKNCILREGKDLAALKLQLQEKVQETLSAVADDGIEQNNLHIWSFGDL
PICYEQRRGGYEVKAYPALVDEKDSVAIRLFDTESQQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKSKLGLYFNTYGKVMDLIDDCIACGVDKLVAQHGGPVWLEAGFARLQEKVRAEL
NDTVVDIARQVEQILTMVFSINKRLKGRIDISLALALSDIKAQLAGLIYRGFVTNNGWKR
LPDTLRYLKAIERRLEKLAVDPHRDRAQMLRIEHIQQVWQQWLNKLPPKRQQDEEVKEVR
WMIEELRVSLFAQQLGTPYPVSDKRILQTIEQLSV
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgctcacagcattatccactctacttggtgaattgatgctccgtgaccaa
cagcgcattcagcgtcggctacacggcgcacgaaaaatcaataatcctgaagccatacag
gcgattactcacgaaattgaagccgaagtcgcgactgcaatgcagcgagtaacccgccgt
cgggcggtctgtccggcgatcagctatccggataatctgcccgtcagccaaaagaaacag
gatatttataacgctatccgtgaccatcaggtggttattgtcgccggtgagactggctcg
ggtaaaaccacacagttgccgaaaatctgtcttgaactggggcggggggtgaaaggggtt
atcggccacactcagccacgccgtttggccgcacggacggtagctaaccgcattgcagat
gagttggacacctcgcttggcggctgtgtcggttacaaagttcgttttaacgatcaggtc
ggtgaaaatacactggtcaaattaatgacggatggcattctgctggctgagattcagcaa
gatcgcctgctgatgcaatacgacactttgatcatcgatgaggcccatgaacgtagcctt
aacattgattttatcttgggctatttacgtgagttattacctaaacgtcctgatctgaaa
gtgatcatcacgtccgcgactattgacccgcaacgcttctcacaacatttcaataacgca
ccaattattgaggtctctggccgtacctacccggtggaggtgcgttatcgcccgattgtg
gatgatgccgatgatgtcgatcgggaccaattgcaggcaatttttgatgcagttgatgag
ttgggccgtgaaagcgccggggatattttgatttttatgagcggtgagcgggaaatccgc
gatacagctgatgcgctgataaagcaaaatttgccacataccgaagtattaccgttatat
gcccgcttatcgaacagtgagcagaatagggtgtttcagtcacatcatgggcggcgaatt
gtgctggcaaccaacgtggcagaaacatcactcacggtgccgggtatcaaatatgttatc
gatcccggcacggcacgtattagccgttacagtttccgtaccaaggtccagcggctacct
attgagcctgtttctcaggcatcggctaatcagcgcaaagggcgttgtggccgtgtttct
gacggtatttgtattcgcctttattccgagcaagattttctctctcgccctgaatttacg
gatccagaaatcctacggaccaatctggcttcggtgatcttgcaaatgacctctctgggg
ctgggggatatcgctgcatttccctttgttgaagcaccggataaacgcaatattcaagac
ggtgtacggttgctggaggaactaggggccattcagaccgccagtaacgggcatcagcaa
ttgacgccattgggccgccagttagcccaacttcctgtcgatccacgtttggccagaatg
gtattgcaagcacaaaaaagtggctgcgtgcgcgaattgatgattatcacctcggcgtta
tctattcaagatccgcgtgagcgtccggtagataaacagcaggcctcggatgaaaaacac
cgccgttttgcagataaagattccgattttctcgcctttgttaatctgtgggattatctc
aaagaacaacaaaaagcgttgtcatcagcacaatttcgtaagttatgccgtagcgattac
ctgaattacctgcgggtacgtgaatggcaggatatttacactcagttgcgtcaggtcgtt
aaagaattagggatacccgtcaacagtgttgccgcagattaccgcagtgtacataccgcg
atactgacaggtttgctttctcatgttgggcagaaagatgttgaaaagcaagagtttacc
ggtgctcgcaacgcccgctttgctattttccccggctccggcttattcaaaaagccccca
aaatgggtcatggtggctgaattggtcgagaccagtcgtctatgggggcgcattgctgca
cgtattgaacctgaatggattgagcctttagcccagcacctggtgaaacaccattatagc
gatccacattgggagaaagcccagggcgcagtaatggccagcgagaaagtgaccttattc
ggcttaccgattgttactgaacgtaagatcaattacggtccgatcgatccactgctatgc
cgcgagttgtttatccgccacgggttggttgaaggtgactggcagacgcggcacacattc
ttccgaacgaatcttaagctattggcggaagtggaagaattggaacacaaatcccgtcgg
cgggatattctggtcgatgacgagacactctttaacttttatgatcaaagaattggtcgt
gatgttatctctgcccgccattttgatagctggtggaagcaagcgagccagacgaaacca
gagttgctgaactttgaaaaaaccatgcttatcaaagagggggcgaacaaagtaaatccg
cttgattacccaaatttttggtatcagggggagctaaaactccggttgtcttatcagttt
gaacccggtactgatgccgatggcgtcacagtacacattccattacctattttgaaccag
atccaggagcaggggtttgattggcagatccctgggattcgccgtgaactggtggtagca
ctcattaaatcattgcccaaaccggtacggcgtaattttgttccagctcccaattatgcc
gacgcttttttggcacgggtaacaccgttagagacgggcttattggaggctttggagcgc
gaattacgtcgcatgactggcgtgacagtgtcacgtgatagctggcagtgggatcaagtg
ccggaccacctcaaaatgacgtttcgtgtgctggacgataaaaactgtattctgcgagaa
ggcaaagatctcgcagccctaaagttgcagttacaagagaaagtacaggaaacactttct
gccgtcgcggatgatggtattgaacaaaataacttacatatctggagctttggcgatctc
cccatctgctacgagcaacggcgcggtggctatgaagtgaaagcttatccagcgttggtg
gatgagaaagacagtgttgccatccgtttgttcgatacggaatcgcaacaacaacaggct
atgtggcagggtacccggcgtttattgctactcaatattccttcgccgattaagtactta
catgagaaattgccgaataaatccaagcttggtctctatttcaatacttatggcaaagtg
atggacctgattgatgattgcattgcctgtggtgtcgataagctggtggcacagcatggt
ggcccggtctggctggaggctggttttgctcgtttacaagaaaaagtccgtgcggaactg
aatgacacggtggtggatattgccaggcaggttgagcagatcctcaccatggtgttcagt
attaataagcggttgaaaggccggatcgatatttcgctggcactggcgctttctgatatt
aaagctcagcttgctggccttatctatcgtgggtttgtcacaaataatggctggaagcgt
ttgcctgatactttgcgctatttaaaggctattgagcgccgtttagaaaaactggcggtt
gatccgcatcgcgatagggcgcaaatgctgcgaattgagcacattcagcaagtatggcaa
cagtggttaaataaattgccgcctaaacgtcagcaagatgaagaggttaaagaagtccgt
tggatgattgaagaactgcgcgtcagtttatttgctcaacagctgggcaccccttatccg
gtgtctgacaaacgtattttacaaactatcgaacagctttctgtctga
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