Yersinia similis: BF17_21785
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Entry
BF17_21785 CDS
T03057
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ysi
Yersinia similis
Pathway
ysi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF17_21785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ysi03019
]
BF17_21785
03009 Ribosome biogenesis [BR:
ysi03009
]
BF17_21785
Enzymes [BR:
ysi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BF17_21785
Messenger RNA biogenesis [BR:
ysi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BF17_21785
Ribosome biogenesis [BR:
ysi03009
]
Prokaryotic type
rRNA processing factors
BF17_21785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AHK21603
UniProt:
A0ABN4CSV6
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All DBs
Position
4532640..4536287
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AA seq
1215 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVTKAKPVVATPAAVNTAVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNANRDGITRDNANRDNANRDNSGRDNTNRDN
VNREGREDQRRSNRRPAQPTATSQGQTEVVEADKAQQREEQPQRRGDRQRRRQDEKRQAP
QEIKVDVAEVAVIEEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNTLESPVSAPVA
QVVVAEVQEEVKLLPQVTAQTDDDGANDRTTNNENGMPRRSRRSPRHLRVSGQRRRRYRD
ERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVGEQVVVEQTAIVEQVSVESIVTEQLP
VEQGQNTVAVQESSTTPAVMTTTAVMTTTAVITPPSVITTPAVAIATSTVTLAPQHKPGG
SSSSAAAVPGRAPIAAAVPVVAETAAAETVVATTEAAIDTVVAAVEPVVTEEPNVTEQVV
AEPAIETAPVEETASVVDITPAVESTPTLEDTAVIVAATVVNTTLETASTVQNDIAEEAI
AEEAIVEERIVNEANVSETVVEETAIAEPAVKDIVTQETTIKQGTIAEPTVETTIVTDVV
AVAKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESTTKGHWERPAFDFSGKGSAGGHAA
ATQATAPATKPQSVE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaattgaacctagtctggaagccgcttttgttgattat
ggcgcggaacgacatggttttcttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgttttacgtgaaggtcaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattaaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgctggtggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcctccctgcaatta
cctgatggcatgggtctgattgtccgaactgcgggtgtgggcaaatctgctgacgcacta
caatgggacttgtcattccgcctgaaacactgggatgcgattaaaaaagcggctgaaggt
cgccctgcgcccttcttaatccatcaggaaagtaacgttatcgttcgtgctttccgtgat
tacctacgcccagacatcggcgaaatcctgattgataatccgaaggttctcgaactggca
aaagagcatattgcagcccttggtcgcccggatttcagcagcaaaatcaaactgtatagc
ggtgaaattccgttattcagtcattaccaaattgaatcgcagattgaatctgccttccaa
cgtgaagtgcgtttgccttccggtggctctatcgttatcgacacaaccgaagcgctgacg
gcgattgatatcaactcagcccgagccacgcgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttgcgtgacctcggt
ggtctgatcgttatcgactttattgatatgaccccagtacgccatcaacgtgaagttgaa
aaccgcttacgcgatgccgtccgtcaggaccgtgcccgtatccagattggtcgtatctcg
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgttgtagtggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgcttgattgaagaagaagcgctgaaagagaacacccatgaagttcac
gccatcgtgccggtacaaattgcatcgtacctgttgaacgaaaaacgtgaatcagtgaac
gccattgagaagcgtcaaggtggtgtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgttctgcgcgtacgcaaaggcgaagaagtcccatctctcagctat
ctattgccacaactgcacgaagcagaaatggctcaaccgctggaagaagccacaattgaa
cgtaagcgcccagaacaaccggcattggccaccttctctctgccaacagaagtgccacca
gaggaggcccctacagtaaccaaggccaaacctgtggttgcaacaccagcagcggttaac
actgcagtggagcaaccaggcttctttagccgcttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagtggtaaaaaccgacgctagcgaa
aatcgccgtaatgatcgccgcaaccctcgccgccagaataatggccgtaaagagcgcaat
gatcgtacaccacgcgaaggccgtgataacgccaaccgcgatggcattactcgtgataat
gctaatcgtgataatgccaatcgcgacaacagtggccgcgataatactaaccgcgacaac
gtcaatcgtgaaggccgcgaggatcaacgccgcagcaatagacgccctgctcaaccaacg
gcgacatcgcaagggcaaactgaggttgttgaagccgacaaagcgcaacaacgtgaagaa
caaccacagcgccgtggtgaccgccagcgtcgtcgtcaggatgagaagcgtcaggcacca
caagaaatcaaagtagatgttgcagaagtcgctgttatagaagaggtacaacctgagcaa
gaagaacgccaacaggttatgcaacgtcgtcagcgtcgccagttgaatcagaaagtccgt
attcaatctgcaaatgatgaactgaatacgttggaatctcctgtaagtgcacctgtcgcg
caggtggtggtggctgaagtacaggaagaagtgaagttactgccacaagttacggctcaa
actgatgatgacggagctaatgaccgtactaccaataatgaaaatggtatgccacgtcgt
tcccgtcgttcaccacgccatcttcgtgtcagtggtcaacgccgtcgccgttatcgtgat
gaacgttacccggcacaatcggccatgcctctggcaggggcttttgcctcaccagaaatg
gcatccggtaaagtgtgggttcgttatccggtaacgccagtcggtgaacaggttgtcgtt
gaacaaacagccatcgtcgagcaggtcagtgtagagagtattgtcactgagcaattgcct
gtagagcagggacaaaacaccgttgcagtacaagagtcgagtacaactccagcggttatg
acaactacagcggttatgacaactacagcggttattacaccgccatctgttattacaaca
ccagccgttgctattgccacctcaacggtaacactggccccacaacacaaaccggggggt
tcttcatcttcggctgctgcagttccaggccgtgcacctatcgctgctgcagtgcctgtc
gttgctgaaacggctgctgctgaaacggttgttgctacaactgaagccgctattgatacg
gtggtggctgctgtggaaccggttgttacagaagaaccgaatgtcacagaacaggtcgtt
gccgagccagctattgagactgctcctgtcgaagaaacagcatcggttgtagacattacg
ccagcagttgaatcaacgcctacgctcgaagatacggctgttatagtcgctgcgacagtg
gttaacactacgctagaaactgcgtcaaccgtacaaaatgatattgctgaagaggcaata
gctgaagaagcgatagttgaagaaagaatagttaacgaggcaaacgtttctgaaactgtg
gttgaagagacagcaatagcagaacctgcagttaaagacattgttacgcaggagaccact
attaaacaggggaccattgctgaaccaacggttgaaaccactatagttactgatgtggtt
gcggtagccaaacaaccggcggttgcgcatccggaaggcgtagtattcaaacacttcgcc
tcagcgccgatgaccaaagcgccagcccctgattacgcacctgaatcaacaaccaaaggt
cactgggagcgtccagcctttgatttctcaggtaaaggctctgctggggggcatgctgcg
gccactcaggcaactgcacccgcgaccaaaccgcaatctgttgaataa
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