Zonotrichia albicollis (white-throated sparrow): 102060776
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Entry
102060776 CDS
T07911
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102060776 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zab03041
]
102060776 (DDX42)
Enzymes [BR:
zab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102060776 (DDX42)
Spliceosome [BR:
zab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102060776 (DDX42)
Complex B
102060776 (DDX42)
Complex C
U2 SnRNP specific factors
102060776 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SBSN_GxHH_rpt
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
102060776
NCBI-ProteinID:
XP_014129076
Ensembl:
ENSZALG00000017437
UniProt:
A0A8D2NHT3
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQSAASAESPMAATAAKGVPGFTSTGSLSSVPPF
PSAAAQGFSSTNSSANSREGGGIARERYNDSRNSRHGEAPRRAEGAAGRGEGAAGRGEGS
GGRGEGGGGRFNDGQRFNDGQRFNDGQRFNEGQRFNEGQRFNDGQRFTEGQRFSDGQRFN
EGQRFNDGQRFNDSQRFTEGQRFNDGQRFNEGQRFNEGQRFNEGQRFNDGQRFTEGQRFS
DGQRFNDGQRFNEGQRFNEAQRFSDGQRFNEGQRFNDGQRFPEGQRYSEGQRYTDGQRHG
EGGGRHGDPSRHSDGRHGDAHRHGEGRHFSDLPGTNRNNGDSRNSESRNGENRKEANSRD
NKTDGFAVPEPPKRKKSRWDS
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtaccaagagaggctttgggtttggtggctttgcc
atcacacctggcaagaaggaggagcccaagctgtctcagcagtcccacagcgctttcggc
accgccggctcctcggcagcgtttgcgaaatcggggcctcctcagctgccttccttctac
aaaattgggtcaaagagagccaattttgatgaggagaatgcctactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcctgcagagaattcccccactcggcag
cagttccattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaggaa
aagaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggcagagaaccccacggctggcgtggtgcaggaggaggaggaggataac
ctggagtatgacagtgatgggaatccaattgcaccttccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccatttgagaaaaatttctatgatgag
cacgaggagatcaccagcctgaccccgcagcaggtggtggagttgcggcacaagctgaat
ctccgggtctctggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatccaa
tgtcagggtgttccagtggcactcagtggcagagacatgattggcatagccaagactgga
agtgggaaaacagctgctttcatctggccaatgctgatccacatcatggatcagaaggag
ctggagccaggggatggtcccatcgcagtgatcgtctgccccaccagggagctctgccag
cagatccactcggagtgcaagcgctttggcaaggcctacaacctgcgctcggtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcacacctggtcgtttgattgatcatgtgaaaaagaaagctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggatttgaataccag
gtcagatcaatcgcgagccacgtccgtcctgacagacagaccctgttgttcagtgccacg
ttccgtaagaaaattgagaaattggctcgggacattctgatcgacccaattcgggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgcctggtggagttcacgtcctcgggcagc
gtcctcctcttcgtcaccaagaaagccaacgcagaggaactggccaataacctcaagcag
gaggatcataacctggggctgctccacggggacatggaccagagcgagaggaataaagtc
atttcggaatttaagaaaaaggggatccccatcctggtggctactgatgtggcagctcga
ggcttggatatcccttccatcaagactgtcatcaactacgacgtggcgcgggacatcgac
acgcacacgcaccgcatcggccgcaccggccgcgcgggggagaagggggtggcctacacc
ctgctgacccccaaggacagcaacttcgctggggacctcgtcaggaacctggagggtgcc
aaccagcacgtctccaaagagctgctggatttggcaatgcagaacccgtggttccggaaa
tcccgttttaaaggagggaagggcaagaagctgaatattggtggtggtggcctggggtac
cgtgagcgccccgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgccgctggtgccagcggctggaccagcgccgggagcctgaactcc
gtcccgacgagttcggcgcagcaaagcgccgccagtgccgagagccccatggcagccacg
gcagcaaagggagtgccaggcttcaccagcacgggcagcctgagcagcgtgccccccttc
cccagcgcggcagcgcagggcttcagcagcacaaacagcagcgccaacagccgggagggc
ggcggcatcgccagagaacggtacaacgacagccgcaacagccggcacggcgaggccccg
cggcgcgctgagggggctgctggccggggggagggggctgctggccgaggggagggcagt
ggtggccgaggggagggcggtggtggccgctttaacgatggtcagcgctttaacgatggt
cagcgctttaacgatggtcagcgcttcaacgagggccaacgctttaacgagggccaacgc
ttcaatgatggccagcgttttactgaaggccaacgcttcagcgatggtcagcgctttaat
gagggtcagcgcttcaatgatggtcagcgcttcaatgatagccaacgtttcaccgagggc
cagcgcttcaacgatggccagcgctttaatgagggccagcgttttaatgagggtcagcgc
tttaatgagggccagcgcttcaacgatggccagcgtttcactgagggccaacgcttcagt
gatggccaacgcttcaatgatggccagcgttttaatgagggccagcgttttaatgaggcc
cagcgcttcagcgatggtcagcgctttaatgagggccagcgtttcaatgatggtcagcgt
ttccccgagggccagcgctacagcgagggccagcgttacaccgacgggcagcgccacggc
gagggcggcggccggcacggcgacccctcccggcacagcgacggccgccacggcgacgcc
catcgccacggcgagggccggcacttcagcgacttgccgggcaccaaccgcaacaacggc
gacagcaggaacagcgagagcaggaacggggagaacaggaaggaggccaacagccgagac
aacaagacagatggctttgctgtcccagagcccccaaaacggaagaagagccggtgggac
agttaa
DBGET
integrated database retrieval system
