Zonotrichia albicollis (white-throated sparrow): 102060819
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Entry
102060819 CDS
T07911
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102060819 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zab03400
]
102060819 (MSH2)
DNA repair and recombination proteins [BR:
zab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102060819 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
102060819
NCBI-ProteinID:
XP_005491525
Ensembl:
ENSZALG00000013792
UniProt:
A0A8D2N6K7
LinkDB
All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARDLF
RTRAVIRQLAGAPGTEKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMILDNAAVQALNLFQSSVENANSAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQLPNV
VQALQKHEGAHQMLLLAVFITPLNDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSAINDEYIKNREEYEEAQDAIVKEIINIASGYSEPMQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGRGRMVLRGARHPCIEAQDNVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIHGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggcgcacggcgcggacgcgcggctggccgcccgcgacctcttc
cgcacccgcgccgtcatccggcagctggcgggggcaccgggaactgagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcctttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaggaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgacatgtccacagccattggggttgtgggggtgaagctgtctgctgctgatgga
cagagggtggtaggagtgggctatgtcgacactacactgagaaaactgagtgtttgtgag
ttcccagataatgatcagttctccaaccttgaagctctactggttcaactgggccccaag
gagtgtgtgctgccaggaggagacactgcaggggagatggggaaactcagacaggtcatt
cagaggggaggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaaccgcttgttgaaatcaaagaaggaagagcaactgaacagtgcagca
ctgccagagatggaaaagcaggttgctgtttcgtctttgtcagctgttatcaagtttttg
gagttgctgtcagatgagtctaattttggacagtttgagctgactacctttgatctaagt
caatatatgattctagacaatgcagctgttcaagccctcaaccttttccagagttctgtg
gaaaatgcaaattctgcacagtctctagctggtttgctgaataaatgcagaaccccccaa
ggacaaagactggttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagagctacgtcagtgcctccag
gaggatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaggactgttacaggatgttccaggctatcaatcagctgcccaatgtt
gtacaagcactacagaaacatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttaatgatatctgctctgacttctcaaagtttctggagatgatagaaacaaca
ttggacatggaaaaggtggagaatcatgaatttctcgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtccttactaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaagctggagacaaattca
cagtttgggcatcactttagggtaacttgtaaggaggaaaaagctctccgtaacaattcg
aaatatggaatcattgatacacagaaaaatggtgtgaaatttactaacagcaaactgagt
gccatcaatgatgaatatataaagaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggctattcagagcccatgcagaccatgaacgat
gtgatagcgcagctggatgccattgtcagctttgcccacgtgtccaatggggccccggtg
ccgtacgtgcggcccgtggtgctggagaagggccggggcaggatggtgctgaggggggcc
cggcacccctgcatcgaggcgcaggacaacgtggccttcatccccaatgacatcaccttc
gagaagggcaagcagatgttccacatcattactggccctaacatgggggggaaatcaaca
tacatccgacagacaggggtgattgttctcatggcccagattgggtgttttgtgccctgt
gagtctgcagaaatcaccattgtggattgtatcctggctcgggtgggagcaggggacagc
cagctcaaaggagtgtccactttcatggctgagatgctggaaactgcctcaatcctcagg
acagcaactgaaaactccctgataatcattgatgagctgggaagaggaacatccacctac
gatggctttggcttggcctgggctatctcggaatacattgccagcaaaatccatgggttt
gccatgtttgccacacacttccatgagctcacagctcttgctgaccaagtgccgacagtg
aacaacctgcatgtcactgctctgaccagcgatgacacactcaccatgctgtatcgggtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagcagagttggcggctttccca
aaacatgtgatagaaagtgcaagagagaaggcactggagctggaggagtttcaaaacatt
ggcaagtccaaggaatccgaaggagaaccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctctgtcaagtgaaagcattgcccttgacagat
atgtcagaagaagacatcaaagtcaagttgaagcagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcgaacgaaagttacatcatga
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