Zonotrichia albicollis (white-throated sparrow): 102061288
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Entry
102061288 CDS
T07911
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102061288 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zab03400
]
102061288 (MSH6)
DNA repair and recombination proteins [BR:
zab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102061288 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
HVO_0758
DUF3334
WPP
Motif
Other DBs
NCBI-GeneID:
102061288
NCBI-ProteinID:
XP_005491528
Ensembl:
ENSZALG00000013795
UniProt:
A0A8D2N1J3
LinkDB
All DBs
Position
Unknown
AA seq
1284 aa
AA seq
DB search
MFFLSSVSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPTEGTIVRGKGKSTRIHVQFFDDS
PTRGWISVKYLKPYKGSSDKETMKGGMFYSTKPEIKRAMVLADDALSKDKTKRLELAVCN
EPSDTEEEEEEVEEMSENASGNSEDCNSEEDVKSNKRVISRERAVKAKRRRVLDSDSDHD
GSDVEFKPDGKEAASSEEASSGVDENESSDTETEAESVAESPIKVPSKRKRREVKKPAKR
SSLGNDCSETPKRAAAVSSDAKSKLTSFAAPESFESQANACSGGTGGFSVWEHEKLEWLQ
EGKRRDAHRRRQGDPDYDPCTLHVPEDYLSKCTPGVRRWWQLKSQNFDAVICYKVGKFYE
LYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMEA
RCRAAGHSSRSDKVVRREICRIITKGTQTYSVMDCDPSENHSRFLLSVKENEDAAGTRLY
GVCFVDTSMGKFHIGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLVSC
IQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSETGCSLPSVIKSLTSESDSLGLTPGEN
SELALSALGGCVFYLKKCLIDQELLSQANFEEYVPVDIATAKTTSSSSLFGRTGQRMVLD
GVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVE
DLLAVPDKMSEVTEYLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKIA
DFLSTLEGFKIMNEIVEFMEEFAGDFKSRVLRQLVTRKAQNPDGRFPDLSAELTRWDTAF
DHNQARRTGVITPKLGFDPDYDGALEDIRALEEDLRKYLDKQRKLLGSKSVQYWGTGKNR
YQMEIPESVISRSLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRL
FYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPEILLPTDNAPPFLELRNSR
HPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLVVMAQL
GCYVPAESCRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLVDELG
RGTATFDGTAIASAVVEELAQRIRCRTLFSTHYHSLVEDHAHSRAVRLGHMACMVENESE
DPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKATISLRIFRYL
CQVVDGATCDANAVRKLTAMIDQL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgttttttctctcttctgtaagtgtctcctgtgaatattctcctggggacctggtatgg
gccaagatggaaggctatccctggtggccatgtctcatttacaaccaccccactgaaggg
acaatagtcagaggaaaaggaaaatccactcgcatccacgtgcagttctttgatgacagc
cctacaaggggctggatcagtgttaaatacctgaagccatataaaggttcatcggacaag
gagaccatgaagggaggtatgttttacagcacaaagcctgaaattaagagagccatggtg
ctggcagatgatgccctgagcaaagataaaaccaagaggcttgaactggcagtatgcaat
gagccttcagacacagaggaggaagaggaagaagtggaggagatgagtgaaaatgcatca
ggcaacagtgaagactgcaacagtgaggaggatgtgaaaagcaataagagggtgataagc
agggaaagagctgtgaaagccaagagaaggagagtgttggattctgacagtgaccacgat
ggctctgatgtggagttcaagcctgatgggaaagaagcagccagcagtgaggaagccagt
agtggggtggatgaaaatgagtcctctgacacagagacagaggcagagagtgttgcagag
agccccataaaagtcccttctaaacgcaagaggagagaggtgaaaaagcctgctaagagg
agtagcctgggcaatgactgttctgaaacacccaaaagagcagcagcagtctcttcggat
gccaagtccaagctgacatcctttgcagcacctgaaagttttgaatctcaagcaaatgct
tgcagcggcggcactggcggcttctcggtgtgggaacacgagaagctggagtggctgcag
gaggggaaaaggagggatgcacacaggcggcgtcagggtgaccctgactacgacccctgc
actctgcacgtgcccgaggattacctcagcaagtgcacgccgggcgtgcggaggtggtgg
cagctcaagagccagaactttgacgccgtgatttgctacaaggtggggaagttctacgag
ctgtaccacatggacgcggtcaccggcgtcaacgagctgggcctcatcttcatgaagggc
acctgggcccactcgggctttccagagaccgcgttcggccgcttctccgatgtcctggtg
cagaagggctacaaggtggcgcgcgtggagcagacggaaacgcccgaaatgatggaggcg
cgctgcagggccgcgggccactccagcaggtccgacaaggtggtgcggcgggagatctgc
aggatcatcaccaagggaacgcagacctacagcgtcatggactgcgacccctccgagaac
cacagccggttcctgctgagcgtgaaggagaacgaggatgcggccgggacgcgcctctac
ggcgtctgcttcgtcgacacctccatggggaagttccacatcgggcagttccccgatgac
cgccactgctccaggttcaggactttggtagctcactacacccctgtgcaggtgctgttt
gagaagggcaacctgtctgtggacacacagaagatactgaagggctcgctggtttcttgc
attcaggaagggctgacctcgggttcccagttctggaatgcgtctaaaacactaaaagtc
cttcttgaggaaggatatttcaaggagaagcagaattctgaaactggatgttctctgccc
tctgtaatcaaatctctgacttcagagagtgactccctgggattaactccgggtgaaaac
agtgagttagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgatc
gatcaggagctgttatcacaggcaaactttgaggaatatgtccctgtggatattgccact
gcaaaaaccacgagttcaagtagtttgtttggcagaactggccagcggatggtgctggat
ggagtcacactgatgaacttggaagtcctgcagaatggaaccaatggaagcactgaaggt
actttgttggaaaggattgattcttgctgtacaccgttcgggaagcgactcctgaaacag
tggctctgcgctcctctctgtaatcctaaatccatcaatgatcgtttggatgctgtcgag
gacctcctggcagtgccagataaaatgtctgaagtcactgagtacctcaagaaactgcct
gaccttgagagactgctcagcaaaattcacagcattgggtcaccactcaaaagtcagaac
catcctgacagcagggccatcttctatgaagagctcaaatacagcaagaaaaaaatcgct
gactttctgtctaccctggagggattcaaaataatgaatgaaattgtcgagttcatggag
gagtttgccggtgacttcaagtccagagtcctgaggcagctggtcacccgcaaagcccaa
aatcccgatggccgcttcccggacctgagcgcagagctcaccaggtgggacacggccttt
gatcacaaccaggctcggaggacaggagtgatcacccccaagctgggctttgaccccgat
tacgacggagcgctggaggacatcagagctctcgaggaggacctgcgcaagtacctggat
aagcagcgcaagctgcttgggtccaaatccgtgcagtactgggggacgggcaagaaccgg
taccagatggagatcccagagagtgtcatctcccgaagcctgcccgaggagtacgagctg
aggtccagcaggaagggctacaagcgctactggaccaaggagatcgagaagatgctggct
gccatggtgaacgccgaggagcgccgcgacgctgccctcaaggactgcatgaggcgcctc
ttctacaacttcgacaagaacagcaaggactggcagacagctgtggagtgcattgctgtg
ctggatgtcttgatgtcccttgctcactacagtcaaggtggtgatggacctctgtgccga
cctgaaatcctgctgcctacagataatgctcctcccttcctggaacttagaaattcccgc
catccatgcatcacaaaaactttctttggggatgattttattcccaatgacatcgtgata
ggcatcaaggatgaaggcagcagcagtgaggcctcctgtgtgctggtaactggccccaac
atgggtggcaaatctacactcatgagacaggctggtctcctggtggtcatggcccagctg
gggtgctacgtgcccgcagagtcgtgcaggctcacgcccatcgaccgcgtgttcacgcgc
cttggcgcctccgacaggatcatggccggtgaaagtaccttctttgttgaattgagtgag
acttccagcattctgcagcatgcaacagagcattcccttgttctcgtggatgaactgggc
agaggcacggccacgtttgacggcacggccatagcgagcgcggtggtggaggagctggcg
cagaggatccgctgccggacgctcttctccactcactaccactccctggtggaggaccat
gcccacagccgggccgtgcgcctgggacacatggcatgcatggttgaaaatgagagtgag
gatccaagccaggaaacaattacgttcctgtacaagttcattgaaggagcctgcccaaag
agctacggcttcaacgctgcaagacttgcagatattccagaggaagtcattcagaagggg
cacagaaaagccaaagagtttgaaaaagcaaccatctcactgagaatatttaggtacctg
tgccaggtggtggatggagcaacctgtgacgcaaacgcggttcggaaactcacggcgatg
atcgaccagctttag
DBGET
integrated database retrieval system
