Zonotrichia albicollis (white-throated sparrow): 102062307
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Entry
102062307 CDS
T07911
Symbol
PCDH20
Name
(RefSeq) protocadherin-20 isoform X1
KO
K16498
protocadherin delta 1
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102062307 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zab01009
]
102062307 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zab04515
]
102062307 (PCDH20)
Protein phosphatases and associated proteins [BR:
zab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102062307 (PCDH20)
Cell adhesion molecules [BR:
zab04515
]
Cadherins
Protocadherins
102062307 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
102062307
NCBI-ProteinID:
XP_005490322
Ensembl:
ENSZALG00000009344
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MGPPGGRGSSGARGSLQHLLLFLLFVGPFNCFASYSRATELFYSLNEGLPAGVLIGSLAR
DLQLPTAGSQQAASLQPPLSFTLASHGLGGQYVQLDNRSGELHTSAVEIDREALCVESSG
ATIFGGSAAVSSSSPSPESCLLLLDVLVLPQEYFRLVKVKIAIRDVNDNAPRFPVPHIRL
WVPENAPVNTRLAIEHPALDPDMGTNGVQTYRLRDNYGVFTLDVEENENGERTPYLIVMG
ALDRETQDEYVTVIVAEDGGTPPLVGSATLTIGISDINDNCPQFNDSQLNVTLYGNSSLG
THVATVHAVDMDLGSNAQITYSYSQKVPQPSRDLFHLNESTGAITLSTKVDGDTPRLHRL
IILGNGPGCIPAMITVLVTIIKVMMRPPEVVPRFIANEVEGVVYLKELEPINTPIAFFTI
KDPDEKYKVSCYLDGDGPFRLSPYKPYNNEYLLETTKPLDFETQQLYEISVVAWNSEGFH
VKKVVKVQVLDDNDNSPVFSEQLIELSIEENNVPNAFLTKLHATDADSGERGQVSYFLGP
DAPSYFALDKTTGVLTVSTQLDREEKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNS
PRFINKDFSFFVPENFPGFGEIGVISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRA
KVSLDREQQSSYVLWIEAVDGGDPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLP
STLPGSPITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYG
LYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDISVEEKHPQISIEP
THKKMESASCMPTLVALSIISLSSIALVTGMGIYICLRKGKKHHRADENLEVQIPLNGRI
NLHMLEKKPVEISNI
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggggcccccgggcggtcgcggcagctccggcgcccgcggcagcctgcagcacttgctc
ctcttcctgctcttcgttgggcctttcaactgctttgccagttacagccgcgccactgag
ctcttctacagcctcaacgaggggctgcctgctggggtgctcatcggcagcctggcccgt
gacctgcagcttccaacggctggcagccagcaagcggcgtctctgcagcccccactctcc
ttcaccctggcctcccatggcttggggggacagtatgtgcagctggacaaccgctccgga
gagctgcacacctcagcggtggagatagaccgggaagctctatgcgtggaaagcagtggg
gccaccatcttcgggggatcggctgctgtctcctcttcgtccccctcaccagagtcatgc
ctactgctgctggatgtgctggtactgccgcaggagtactttcgcctggtgaaggtaaaa
attgctattcgtgatgtcaacgacaacgcgccccgcttccctgtgccccacatccgcctc
tgggtgcctgagaatgcgcctgtgaacacccgcctggccatcgagcaccccgccctcgac
cctgacatgggcaccaatggtgtccagacctaccgcctgcgagataactatggtgtcttc
accctggatgtggaggagaatgagaatggggagaggactccctacctgattgttatgggg
gcactggacagggagacgcaggacgagtatgtgacagtcatcgtcgctgaggatgggggg
actcctccgctcgtgggcagcgccaccctcactattggcatcagtgacatcaatgacaac
tgcccccagttcaatgactcgcagctcaacgtcactctctatgggaattccagcctaggg
acacacgtggctactgtccacgctgtggacatggatcttggatccaatgcccagatcacc
tactcctacagccagaaggtcccccagccatccagagacttgttccatctgaatgaaagc
acaggagccatcacactctccactaaggttgatggggacactccaaggctgcacaggctg
atcatactgggcaacggtcctggctgtattcctgccatgatcacggtgctggtgaccatc
atcaaagtcatgatgaggccccctgaagttgttcctcgtttcatagctaatgaggtggaa
ggggtggtctacttaaaggaacttgagcctatcaacacacccatagcattttttaccatc
aaagaccccgatgaaaagtacaaagtcagttgctatttggacggtgatgggcctttcagg
ctttcaccgtacaagccatacaacaatgaatacctgttggagaccacgaagcctttggac
tttgagacacagcagctgtatgaaatctctgtagttgcatggaactctgaaggatttcat
gtcaagaaagttgtcaaagtacaggttctggatgacaacgacaattcaccagttttctct
gaacagctgatagaattgtccattgaggagaacaatgttcccaatgcttttttgaccaaa
ctgcatgctactgatgctgacagtggagaaagagggcaagtgtcctatttcttaggtcct
gatgccccttcttattttgctttagataaaactacaggagttcttacagtttctacccag
ctggacagagaagaaaaagagaaatacagatatactgtcaaagcagtagattctggattc
cctccaagagaatcaatagcaactgtcaccatcactgtattggataaaaatgataacagt
ccaagatttatcaataaggatttcagcttttttgtgccagaaaactttccaggctttggt
gaaattggagttataagtgtcacagatgctgatgcagggcaaaatggatgggttgccctt
tcagttctgaacggaagtgatatttttgttatagatactggaaaaggagttttgagagct
aaagtctccctggacagggagcagcaaagctcctacgttctgtggattgaagcagttgat
ggcggtgatcctgccctgtcttctacagcaaaaataactatccttcttctagacataaat
gacaaccctcctttggtcttgttccctcagtctaatatgtcttacttgttagtccttccc
tctacccttcctggctctcccatcactgaggtctatgctgtcgataaggacaccggcatg
aatgcagtcatagcttacagtatcataggaaggagaggccctcgacccgagtcgtttagg
attgaccccaaaactggtaacatcaccttggaagagtcactgatgcagaatgactatggc
ctctatcggctgctcgtgaaagtcagtgaccacggctacccggagcctctccactccacc
gtcatggtgaacctttttgtcaatgacaccgtcagcaatgagagctacatcgagagcttg
ttaaggaaggagcctgatatcagtgtagaggaaaagcatccacaaatatccatagagcct
acacataaaaaaatggagtcagcgtcctgcatgcctaccttggtagctctttcaataata
agcttgagttcgattgctttagtaacggggatgggaatttacatttgtctgagaaaaggg
aaaaagcatcacagagcagatgaaaacttggaagtacaaatccccttaaatggaagaatt
aacctgcacatgttggagaagaaaccagtggagatttctaatatctga
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