Zonotrichia albicollis (white-throated sparrow): 102062751
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Entry
102062751 CDS
T07911
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
zab00535
]
102062751 (COL15A1)
Proteoglycans [BR:
zab00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102062751 (COL15A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
102062751
NCBI-ProteinID:
XP_026646003
Ensembl:
ENSZALG00000003570
LinkDB
All DBs
Position
Unknown
AA seq
1298 aa
AA seq
DB search
MLSWHAWWTWDLSLLLFGLSIHAGAAAQIIEERGSKGHLDLTELIGVPLPPSVYFVTGYG
GFPAYSFGPDSNIGRLTSAIIPSPFYSDFAIVATVKPNSDRGGVLFAITDAFQKTIYLGL
RISPVDDSTQRIIMYYTEPGSHISREAASFKVPVMTNRWNKFTVTVEGNYIALFMDCEEY
QRLQFQRPARTLVFEPGSGIFVGNAGATGLEKFTGSIQHLTIKSDPRTTEDHCEDDDPYA
SGDSSGNGSIQEHDSSEAQEALAPSHLPIRPEDSLAEPVEAPPTILAYLEENDFSGNHRP
EETSEAAKFKEQDLAVMETGQDNNESSNVTQKMLREEDGSGAGVLPGVSREEGQKGQEVE
DGSTESLGGSGIEDVENKDQGPPGSPGKLGQLGQSGIPGKNGSPGKNGLQGLPGQKGKAG
QKGEKGDPGEGLPGPPGLPGPTGPSAPSRGLNRLEPEESGSGDTDRETEILRGLPGPPGP
PGLPGLPGNPASDTGVGPPGSSGEDGASGEPGPEGPQGPPGCDGVAGPPGWKGEKGDQGL
PGSAGPKGDTGVTGSIGPKGEAGPIGSPGKPGPPGPPGPPGPPGPPGPSYSSGFEDMEGS
GSIDLLSESRIPRPREPKGSAGRPGQRGPLGPKGERVNIGPPGLKGMPGTDGKPGLPGIA
GHPGEVGPKGEKGDPGPRGEPGQDGNSIVGPPGPPGPPGPVIAIPELLLNETGGISNFTE
IKGLLGPPGPDGKPGLPGFSGPRGPKGDTGLPGSQGPKGQQGEKGEPGAIISADGSLTEL
LGRKGEKGEAGVMGPVGPMGPIGPTGPKGELGFPGRPGRPGLNGLRGVKGDRGEAFNGLP
GLPGPPGPPGPPGRILYIKGTVFPVPPRPHCKMPVNSPYPGNQEVLNDHGAKANRDSWGL
HSSAYLKGEKGDRGAPGPPGPPLPPSYFSHFINSIKGEKGDNGVTGVKGEKGEPNGGFFL
TGPPGPPGRPGLIGPKGDSVVGPRGPPGLPGLPGLPGYGKIGPPGPPGPPGPPGPPAIYG
SAVAMPGPPGPPGEPGSPATRNLVTTFQNIEGMLEKVHYVAEGTLIYLRETSEVFIRVQK
GWRKLQLGELIPIPADSPPPPAISSHGFQSIPALRPVSYMNNGKPALHLVALNFPLSGDM
RADFQCFRQAQLAGLTSTYRAFLSSHLQDLATVVRKTDRHHLPVVNLQGQTLFSNWESIF
DGNGGQFNIHVPIYSFDGRNVMTDSSWPQKIIWHGSTANGIRLVSNYCEAWHTADMGAMG
QASPLNTGKLLEQKVYSCNNQFIVLCIENSFVSDPQGK
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgctctcatggcatgcctggtggacctgggacttgtcgctactgctctttggcttgtca
atccatgccggtgcagcagctcagatcatagaagaacgaggctcaaaaggacaccttgac
ctcacagagttaataggagtccctcttcctccttctgtctactttgtgacgggctacgga
gggttcccagcttacagctttggtccggattccaacatcggccggctgaccagcgctatc
ataccatcgcctttctacagcgactttgctattgtggctaccgtgaaaccaaacagtgat
cgtggaggagtgctctttgcaataacagatgccttccagaagacaatctacctaggactg
aggatttccccagttgatgacagcactcagagaataatcatgtactacacagagcctgga
tcccatatctcccgagaggctgcttcctttaaagtgccagtgatgactaacaggtggaac
aaatttacagtgactgtggagggaaattatattgctttgttcatggactgtgaagagtat
cagaggcttcagtttcaaaggcctgctcgaaccttggtatttgaacctggctctggcata
tttgttggtaatgcaggagccacaggactggaaaagttcacaggttcaattcaacatctg
acaatcaaatctgatccaaggactactgaagatcattgtgaagatgatgacccttatgct
tcaggggacagcagtggcaatggcagcattcaagaacatgacagttctgaggcacaagaa
gctctggcaccttctcatcttcccataaggcctgaagattcgttggctgagccagtggaa
gcccccccaaccatactggcttatttggaagagaatgatttctctggaaatcacagacca
gaagaaacctcagaggcagctaaatttaaagaacaagatttagctgtcatggaaactgga
caagacaacaatgagtctagcaatgtcacacagaaaatgttaagagaagaagatggctct
ggtgctggtgttttgccaggagtaagcagagaggagggccagaaaggtcaggaagtagag
gacgggtccacagagtctctaggagggtcaggaatagaagatgtggaaaataaagatcaa
ggacctcctggatctccagggaaacttgggcagcttggtcagtctggcattcctggtaaa
aatgggtcacccggcaaaaatggacttcaggggttgccaggacagaaaggaaaagcaggc
caaaaaggtgaaaagggtgatcctggtgagggattgccaggaccccctggactaccagga
cccacaggaccatctgctccttccagaggattaaatagactggaacccgaagaatcaggt
tctggagatactgacagagagactgagattttaaggggtcttccggggccaccaggccct
ccaggactgcctggtcttccaggaaacccagcatctgatacaggtgtaggaccgcctggg
tcatcaggagaagatggagcttctggggaaccaggccctgaaggccctcaaggtcctcct
ggctgtgatggagtggctggcccaccaggatggaagggagaaaagggtgatcaaggtcta
cctgggtctgctggtccaaagggtgatactggagtcactggatcaataggccccaaagga
gaagctggccctattgggtctcctggaaaacctggaccgcctgggcctcctggaccccct
ggacctcctggaccaccaggaccaagttacagctcgggatttgaggatatggaaggatca
ggtagcatcgacctgttaagtgaatcaagaattcccagaccaagggaaccaaagggttct
gcaggaagacctggacagcgtggaccattaggaccaaagggagaaagagtcaacataggt
cccccaggtttaaaggggatgccaggcacagatggaaaaccaggccttcctggcattgct
gggcatcccggagaagtgggtccaaaaggagagaagggtgacccaggacctcggggtgaa
ccaggacaggatgggaacagtattgtgggaccacctggaccaccaggaccaccaggacca
gtcatagcaatacctgaattacttctcaatgagacaggtgggatttctaattttactgaa
attaaaggactgcttgggcctccagggccagatggcaagccaggtctaccaggattttct
ggccctcggggtccgaagggtgatactggtttgcctggatcacaaggacctaaaggacag
cagggtgaaaagggagagccaggagctatcatttctgctgatggatctttaactgaatta
ttaggaagaaaaggggagaagggtgaagctggagtgatgggaccagtgggaccaatggga
ccaataggacctactggacccaaaggagagcttggcttcccaggacgcccaggccgtcca
ggactgaatggactgagaggtgtgaaaggtgatcgaggtgaagcatttaatggccttcct
ggcttgcctgggcccccagggccccccggacccccaggacgaatactttatatcaaagga
acagttttcccagtccctcccaggcctcattgcaaaatgccagtgaactctccctatcct
gggaatcaagaagttcttaatgatcatggcgctaaagcaaacagagattcctggggactg
catagttcagcatacttaaaaggagagaagggagacagaggtgctccaggaccaccaggt
ccacctctgcctccatcatatttcagccactttattaatagcataaagggtgaaaaagga
gacaatggagtcactggtgtaaaaggagaaaaaggagaaccaaatggagggtttttcctg
acaggacctcctggacccccgggaagaccaggattaattggaccaaaaggggactcagtt
gttggacccagaggacctccagggttaccaggcctacctggcttaccaggttatggaaaa
attggacctcctggcccacctggaccacctggaccaccaggcccccctgcaatatatggc
tcagcagttgcaatgcctgggccaccaggtcctcctggagagccagggtcacctgccacc
aggaatctggttacgacattccaaaacattgagggcatgttggaaaaagttcattatgta
gcagaaggtacactaatctatctgagggaaaccagtgaggtttttatccgtgttcagaaa
ggatggagaaaattgcagcttggtgagctaattcctatccctgctgacagccctcctcct
ccagccatatcaagccatggatttcagtctattccagcactgagaccagtatcatatatg
aacaatggaaaaccagcattgcatctggtggctttgaacttcccattgtccggtgacatg
cgagcagattttcagtgctttcggcaggcccagcttgctggtttgacatccacctacaga
gccttcctctcatcacacctgcaagatctggccacagttgtcagaaaaacagaccgacac
catttgccagtagtcaaccttcagggacaaacccttttcagtaactgggaatctatattt
gatggaaatggtggacaattcaacattcatgttccaatatactcctttgatggcaggaat
gtcatgactgattcatcttggcctcagaaaataatatggcatggttcaactgcaaatggg
atccgactggttagcaactactgtgaagcctggcacacagctgatatgggagctatggga
caagcatcgcctctgaacacagggaaacttcttgaacagaaagtatatagctgtaataat
cagtttattgttctctgtattgaaaacagttttgtctctgatccccaaggaaaataa
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integrated database retrieval system
