Zonotrichia albicollis (white-throated sparrow): 102062821
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Entry
102062821 CDS
T07911
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X2
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102062821 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zab03032
]
102062821 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
zab03400
]
102062821 (TOPBP1)
DNA replication proteins [BR:
zab03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
102062821 (TOPBP1)
DNA repair and recombination proteins [BR:
zab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102062821 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
102062821
NCBI-ProteinID:
XP_005481074
Ensembl:
ENSZALG00000003966
UniProt:
A0A8D2M700
LinkDB
All DBs
Position
Unknown
AA seq
1514 aa
AA seq
DB search
MRSSKEPFFVKFIKSHGSSEYFSKALESIKEFQSEEHLQILEEKTVLNIRENDKSLYICD
PFSGVGFSHLKKLGCRIVGPQVVLYCMQSQRCVPRAEHPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
GMMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDETMYKIEAGSQLSNAPSTSTPTND
TSKPPNHAFSDVSHISNINLSGVNETACSSAMSSRLDPVSDELENLDISSFQAAEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVIVGENTDELKHFLDKTAHRPHI
VTAKWLLESFGKGCLCPVEHYIPLNYQLLENPILEQPGMKSIFPKKASLLKKDAVNIIKH
QKTAEDDFLSQYADDYSALDEVEKLTSRTFSDVTSSTAQGENQPSVCNGSLAESSALAEG
GLFFRKRFFLLGFSEEDESCLADIIKENAGEVLPLQSRTIADYAVVPLLGCTVKATVGDV
VTNTWLITCMEQQALLDLRSNPLFTPVLVMEGATPLEDCVLSFSQFTGAERDSLAYLAEL
LGARVQEFFVRKASAKKGMFASTHLVVREPNGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENAEAEDTESFITQLSKTPATVKSPNFEQPIHILEAGKKGPVTPLDINRFQS
KAFQAVISHHTGKTTPVAQGGPLQKEPSLNLDTPSKFLSEDKIFKPSFDVKDALEALATP
RGFEQRNRKLSTPLSEVIGRNLKLALASSTTHAAAFTASPQLAAAQPEVEEEPKPLAGAV
IYVSKKLCKRQRELNAVAASLGADYRWCFDETVTHFIYKGGQNDSNKEYKSVKERGIHIV
SEHWLLESAQECKWLPESLFPHTYNPKMSLDISAAQDIRLSSSSFLSTGKPAEENEIIPE
DEDDVTTDQIKGTVTVGEEQTVASESKGVLTQALEMRENFQKQLQELMSATSLVKPQGQR
GSLSRSSFDGSPATPDSARSVRNGRSRVLEALRQSRQALADVNTEPSQSEQIIWDDPTAR
EERARLVSNLQWPNSPSQYLEQGQSNTNKNVDESALKGSVPDAEMAGIDVPEAGHGDVTE
RLKNPICRDPETPVKDNLIPTPQAPSIAFPLANPPVAPEPKEKVVTEDKKVDEETEKFRK
FQLSSLNPQERIDYCHLIEKLGGIVLEKQYFDASCTHIVVGHPLRNEKFLASMAAGKWVL
HRSYLEACRGAGCFVQEEDYEWGSNSILNVLSGINVNQKKLAVAAMRWRKKIHKGKQETG
VVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSASLFKEATHLFADFSKLKPED
SRVDVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAVSYPQNNSDLGIGSSQKRK
ALGEMSRVKRSRIH
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagtaaggagccgttttttgtgaagttcataaagtctcacgggagctcggag
tatttttctaaagctcttgagtctataaaagaattccagtcagaagaacatctccagatc
cttgaagagaaaacagtactcaatataagagaaaatgataaatcactttacatttgtgat
cctttcagtggtgtgggtttcagtcatctcaagaagcttggctgtaggattgttggacca
caggtagttctgtactgcatgcagtcgcagcggtgtgtcccgagagccgagcatcccgtg
tacaacatgaccatggccgatgtcacagtgtcctgtaccagcctggagaaggacgtgagg
gaagaagttcataaatatgtgcaaatgatgggtggatgtgtatacagagatctcaatgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttggtagctgcttct
ctgaagaaacctattttgcttccctcttgggttaagacattgtgggataagtctcaacaa
ggcatgatgaggtacactgatgttaacatggaagactacgcctgtcctgtgttccttggc
tgcacgatttgtgtcactggcttaagcagctccgacaggaaagaagtgcagcgcctcact
gctgagcacggtgggcagtacacggggcagctcaagatgaatgaatgcactcacctcata
gtgcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tcagtgcagtggttttctgacagcatcaagaaaggcttctgtcaggatgagacaatgtat
aaaatagaggctggatcacaactgagtaatgcacccagtacatcaacacctacaaatgac
accagcaagcctcccaatcacgccttttcagatgtcagccacatttccaatatcaatttg
agtggtgttaatgaaactgcatgtagttcagctatgagcagcagactggatcctgtttct
gatgagctggaaaacctggacataagttcttttcaagccgctgaagatttgctagatggg
tgtcgaatctatctctgcggcttcagtggcaggaagttggacaagatgagaaggcttatt
aattgtggtggtggcgttcgatttaatcaacttaatgaagatgttactcatgtcattgtg
ggggaaaatactgatgagctgaaacactttttggacaagacagctcacaggcctcatata
gtgacagcaaagtggttgctggagtcatttggtaaaggttgtctatgtccagtggagcac
tatatccctctaaactaccagctgttagagaatccaattttagaacaacctggaatgaag
tcaatttttcccaaaaaagccagtctcttgaagaaagatgctgtgaacattataaagcac
cagaaaactgctgaagatgacttcctctctcaatatgcagatgactattctgcactagat
gaagttgaaaaactaacatccagaaccttcagtgatgttactagctcgactgcccaagga
gagaatcagccttctgtctgtaatgggtctttggcagagtcttctgcactggctgaagga
ggcttatttttcaggaagagattttttcttctgggttttagtgaagaggacgaatcctgc
cttgcagatattattaaggagaatgctggggaagttctgccactgcaaagcagaaccatt
gcagactatgctgtggtgcctttgttagggtgcactgtgaaggcaactgttggtgatgtc
gtcacaaatacatggctgataacgtgcatggaacaacaggcccttttagatctcagatcc
aatccacttttcacaccagtcctggtaatggaaggagctacccctctggaagattgtgtt
ctttctttcagccagttcacgggtgcagagagagactcccttgcttatctggcagagctg
ctgggagccagagtccaagaattctttgtgcggaaggccagtgccaaaaaagggatgttt
gccagcacccatcttgtggtgagagaaccgaacggctccaagtatgaagctgcgaagaag
tggaatttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagagg
gcagatgaaagcaagttcttggttgaaaatgcggaggctgaagatacagagagtttcatt
actcagcttagcaagacaccagcgactgtaaaatctcctaattttgagcagcctattcat
attcttgaagctggaaaaaaaggacctgtgaccccccttgatatcaacaggtttcagagt
aaagctttccaagctgtaatctctcatcatactgggaagacaactcctgttgcacaaggg
ggaccacttcagaaagaaccatctttaaatcttgacacaccatcaaagtttctttccgaa
gacaagatcttcaagccttcttttgatgtgaaggatgctctggaagctctggcaactcct
agaggttttgaacaaagaaacaggaaactgagcacacctctctccgaagtcattggcaga
aacttgaaactggcactggcaagcagcacaactcatgcagcagcttttactgccagccct
cagttggctgctgcacagccagaagtggaagaagagcccaagcctctagctggtgctgtt
atatatgttagtaaaaaactttgtaagaggcaaagggagctgaatgcagtagcagcttct
cttggagcagactacagatggtgctttgatgaaacagtaacacacttcatctataagggt
ggacagaatgatagcaataaggagtacaaatctgttaaagaacggggtatacatattgtt
tcagaacattggcttttagagagtgcccaagaatgtaaatggcttcctgaatctcttttt
cctcacacttacaatcccaaaatgagcctggacatcagtgcagcgcaagacatcaggctc
tcctcctcctcctttctttcaactggaaaaccagctgaggaaaatgagattattccagag
gatgaagatgatgtaactactgaccaaataaagggaacagtcactgtaggagaagaacaa
actgtagcaagtgaatccaaaggagttttaacccaagcactagaaatgagggagaacttc
cagaagcagctgcaggagctcatgtctgccacatcactagtgaaaccacaagggcaaaga
ggatccctttcaaggagcagctttgatggctctccagccactcccgacagcgcacggtct
gtgcgaaatggccgcagtagggtcttggaagctctaaggcagtcccgccaggcactggca
gatgtaaatacagagccatcccagagcgagcagatcatttgggatgatcctactgcgagg
gaagagagagcaagacttgtcagcaaccttcagtggcctaacagtccctctcagtacctt
gagcaaggtcagagtaacaccaataagaacgtggatgagtctgccctcaaaggatccgta
cctgatgcagagatggctggtatagatgttcctgaggctgggcatggagatgtgactgaa
aggctgaagaatcccatatgtagagatcccgaaacacccgttaaggataacttgatccct
actccacaggcacccagcattgctttccccctggctaaccctcctgtggcaccagagccc
aaagaaaaggttgttactgaagataagaaggttgatgaagaaacagaaaaattccgtaaa
tttcaactgtcttctcttaatcctcaagaaagaattgattactgccatctgattgagaaa
ttaggtggaatagtgcttgagaagcagtactttgatgcgagctgcacacacattgttgtg
ggacatcctcttcgcaatgagaaattcttggcctcgatggcggctggcaagtgggtgctt
caccgttcctacctggaggcgtgcaggggagctggctgctttgttcaggaagaagactat
gagtggggaagtaactccatacttaatgttttgtctggaatcaatgtaaaccagaagaaa
ctagcagtggcagccatgaggtggaggaaaaaaattcataaagggaagcaagaaacaggt
gttgttgagggtgctttcagtggttggaaagtgatcctgaatgttgatcaaaccaaggag
gcaggattcaggcgccttcttcagtcgggaggagcaaaagtgttctctggccattctgct
tctctctttaaagaagcaactcacctctttgctgacttcagcaaactgaagccagaggac
tccagggtggacgtggcagaggcagcagcccagggagtgaactgcctcaaacccgagtac
atcgctgactacctcatccaggatccacctccccctatggagtcttactgcttgccagaa
gctgtgtcttaccctcagaataactcagatcttggaattggatcatcccagaaaagaaaa
gcactgggagaaatgagcagagtcaagcgatccagaatacactaa
DBGET
integrated database retrieval system
