KEGG   Zonotrichia albicollis (white-throated sparrow): 102067198
Entry
102067198         CDS       T07911                                 
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
zab  Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03420  Nucleotide excision repair
zab04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:zab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102067198 (ERCC8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102067198 (ERCC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zab04121]
    102067198 (ERCC8)
   03400 DNA repair and recombination proteins [BR:zab03400]
    102067198 (ERCC8)
Ubiquitin system [BR:zab04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     102067198 (ERCC8)
DNA repair and recombination proteins [BR:zab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102067198 (ERCC8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_C WD_LRWD1 NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_LRRK2 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_SCAP Beta-prop_HPS5
Other DBs
NCBI-GeneID: 102067198
NCBI-ProteinID: XP_005489832
Ensembl: ENSZALG00000011582
LinkDB
Position
Unknown
AA seq 399 aa
MLGLMAARQAGLDDPARLRRAERTRRVLSLELNKDRDVERIHGSGINTLDIEPVEGRYML
SGGSDGVIVLYDLENLSRKPSYTCKALFSVGRSHPDVHKFSVETVQWYPHDTGMFTSSSF
DKTLKIWDTNTLQPADIFHFEGTVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSSSH
ILQGHRQEVLAVSWSPRHEYVLATGSADGRVKLWDVRRASGCLSTLDQYNGEKSKSSSEA
ANTAHNGRVNGLCYTNDGLHLLTVGTDDRMRLWNSSTGENTLVNYGKVCNESRKGLKFAI
SCGCNPEFTFVPYGSTIAVYTVFTGELITMLRGHYSTVNCCVFQPHFQELYSGSKDCNIL
AWIPAPREPVPDDTSEKSLPQQHVNPAYEDAWSSSDDEG
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgttggggctcatggctgctcgccaggccgggctggacgaccccgcgcggctgcgccgg
gccgagcgcacccggagagttttaagtttggaattaaataaagatagagatgtggaaaga
atacatggaagtggcatcaacacccttgatattgagcctgttgagggaagatacatgtta
tctggtggatcagatggcgttattgtactttatgaccttgaaaacttgagcaggaagcca
agttacacgtgtaaagcacttttttcagttggaaggagtcatcctgatgtacataaattc
agtgtggagacagtccagtggtatcctcatgacactggcatgtttacatcgagctcattt
gataaaaccttgaaaatatgggatacaaacactttacaacctgcagatatatttcatttt
gagggaacagtctatagccatcatatgtctccaattgctacaaagcactgtttaatagca
gttggtaccaaaagccccaaagtacagctctgtgacttgaagtctggatccagttctcac
attctgcagggtcacagacaagaagtattggcagtgtcttggtccccacgtcatgaatat
gttttggcaacaggaagtgctgatggtagagtaaaattgtgggatgtgaggagagcttct
ggatgtctaagtacacttgatcagtacaatggagaaaagtccaaatcatcttctgaggca
gcaaacactgctcacaatgggagagttaatggtttatgctatacaaatgatggacttcac
ctgctaaccgttggtacagatgatcgaatgcgactctggaatagctccactggagaaaac
accttagtaaactatgggaaagtctgtaatgaaagtaggaaaggactcaaatttgccatc
tcttgtggctgtaatccagagtttacctttgttccgtatggaagtaccattgctgtttat
acagttttcacaggagaactgataactatgcttagagggcactatagtactgtcaactgc
tgtgtatttcaacctcattttcaggaactttatagtggtagcaaagactgcaatatcctt
gcatggataccagctccacgagagccagttcctgatgatacgtctgaaaagtctctgcct
caacaacatgtaaatccagcgtatgaagatgcttggagcagcagtgatgatgaaggctga

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