Zonotrichia albicollis (white-throated sparrow): 102068340
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Entry
102068340 CDS
T07911
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102068340 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zab03019
]
102068340 (MTREX)
03041 Spliceosome [BR:
zab03041
]
102068340 (MTREX)
03009 Ribosome biogenesis [BR:
zab03009
]
102068340 (MTREX)
03016 Transfer RNA biogenesis [BR:
zab03016
]
102068340 (MTREX)
Enzymes [BR:
zab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102068340 (MTREX)
Messenger RNA biogenesis [BR:
zab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102068340 (MTREX)
Spliceosome [BR:
zab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102068340 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
102068340 (MTREX)
Ribosome biogenesis [BR:
zab03009
]
Eukaryotic type
Pre-60S particles
Helicases
102068340 (MTREX)
Transfer RNA biogenesis [BR:
zab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102068340 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102068340
NCBI-ProteinID:
XP_005490709
Ensembl:
ENSZALG00000005521
UniProt:
A0A8D2MD39
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAAAGAKKSKTVPAEGARRPGKRLEEKPSVPAAIVKPKREAE
IDSTENVILGKKPKLEDVLSDDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGD
DYGWGVVVNFSKKSNVKPNSSELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQ
VVPVLVHLVSAISSIRLYIPKDLRPIDNRQSVLKSVLEVQRRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gctgctggcgccaagaagagcaaaacggtccccgccgagggtgccaggaggccggggaaa
agattagaagaaaaaccttcagtaccagccgcaatagtcaaaccaaaaagggaggctgag
attgatagtactgaaaatgtcattttggggaaaaagccgaaattggaagatgttttatca
gatgatgttaatctgacagatctgatgcctcaggtaaaggtgcagtctgtggaaactgtt
gaaggttgtacgcatgaggttgcgcttccagcaaatgaagaattcacaggtctgaagcca
agaactggaaaagctgcaaaagagtatccatttattcttgatgccttccagagagaagct
attctttgtgtagataataaccagtctgtgttggtgtcagctcacacatcagctggtaaa
actgtttgtgctgagtatgcgattgccctggctttgagggagaagcagcgtgtgatattt
acaagtccaattaaagctttgagtaaccagaagtaccgtgagatgtatgaagaatttcag
gacgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtcgca
tgggttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaa
gagacgattattttgcttcctgataatgtacattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacaaccttgccatgttatt
tacactgactatcgacctactccactgcagcattatatatttccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgcaggagacttagcaaaaggggatcagaaaggaaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctt
ctgaagcgaggaattggtattcatcatggtggtttgcttcctatattaaaagaaaccata
gaaatccttttctcagagggcctaataaaggccttatttgcaacagagacttttgctatg
ggaattaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgcgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaaccatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatac
aacatggtattgaacttacttcgagtggaggaaattaaccctgaatacatgttagaaaaa
tcattttatcagttccagcattacagaactattccagaaatagtggaaagagtcaataat
ttggaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactac
agaatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaagcca
aagtactgcttgccctttctacagccaggaagactagtaaaggtgaagaatgaaggtgat
gactacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattcc
agtgaattggacccattgtatgtagtcgaagtgctcctgcactgcagcaaagacagtttg
aaaaattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcag
gttgttcctgttttggtgcatcttgtctcagctatcagcagtatccgcctgtacatacca
aaagacctgaggcctattgataacaggcaaagtgtgttaaaatctgtactggaggtacag
agacgttttcctgatggagtacccttactagatcctattgatgacatgggcatcaaggac
caagggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacat
cctcttcacaacgatccaaacttggaaacgatatacaaactttgtgaaaaaaaagcacag
attgctatggatattaaagtagcaaagcgagaattgaagaaagccagaactgtcctgcaa
atggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacggaaatgatgttcaatggtctcttcaatgatttgtctgcagagcaggcaactgca
ctgctcagctgtttcgtgtttcaagagaattccagtgaaatgccaaaactgactgaacag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagca
gaagcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagat
gtctttgaaggtagcataattcgttgcatgaggcggctagaagaactgcttcggcagatg
tgccaggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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integrated database retrieval system
