Zonotrichia albicollis (white-throated sparrow): 102068396
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Entry
102068396 CDS
T07911
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102068396 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zab03041
]
102068396 (SF3B1)
03036 Chromosome and associated proteins [BR:
zab03036
]
102068396 (SF3B1)
Spliceosome [BR:
zab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102068396 (SF3B1)
Complex B
102068396 (SF3B1)
Complex C
U2 SnRNP specific factors
102068396 (SF3B1)
Chromosome and associated proteins [BR:
zab03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102068396 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
102068396
NCBI-ProteinID:
XP_005490963
Ensembl:
ENSZALG00000013508
UniProt:
A0A8D2QH89
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacatctattgcagct
actgaattggaagatgatgatgatgactacccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtctcgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaagaaattgtccagttgggatcaagcagag
actccagggcacaccccatccctgcgatgggatgaaaccccaggccgtgcaaagggaagc
gaaactccaggtgccaccccaggctccaagatctgggatcccactcccagccatacccca
gcaggagctgcaacgcccggccgggacacgcctgggcacgcaacgccgggccatgggggt
gccacttccagtgcacgcaaaaatcgctgggatgaaacccccaaaacagaaagagatact
ccgggccatggcagtggctgggctgagacacctcgtacagacagaggcggtgactccatt
ggtgagacaccgaccccaggagcgagcaaaaggaaatcccgctgggatgaaacgcctgcg
agccagatgggcggcagcactcctgttctgacacctggcaaaacacccattggaacccca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgctatgtttcctgaaggatataaggttctgccacccccagcaggttacgtgccc
atccgtacccctgctcggaagctcacagccactcccacgcccctggggggtatgacgggg
ttccacatgcagaccgaggaccgcaccatgaagagtgtcaatgaccagccatcgggcaac
ctgcccttcctgaaaccagacgatatccagtacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaagagagaaaaataatgaaattacttctgaaa
ataaagaatggcacgcctcccatgcgaaaggctgcgctgcggcaaattaccgataaagct
cgggaattcggagcggggccgctgttcaatcagatcctgcccctgctgatgtctccaaca
ctcgaagatcaggagcggcacttgcttgtcaaagtcatcgacagaattctgtacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gcaggtttggcaacaatgatctccacaatgcgacctgatatcgataacatggatgagtat
gtcagaaatacaacagctcgagcctttgctgttgttgcatctgctctgggcatcccttct
ctgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgcgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaggttcgcacc
atcagcgctttggccattgctgctttggctgaggcagccactccctatggtattgagtca
tttgactctgtcctgaagcccttgtggaagggtatacgtcaacacagaggaaagggtttg
gctgcgttcttgaaggccattggttacttgattccactcatggatgctgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttaaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacgactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaagatggtcatggaaacaattgagaagatcatgggaaatctgggggcagcagac
atcgatcacaaactggaagaacagctcattgatggtattttgtacgccttccaggaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctgggcaaa
agggtgaaaccgtacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatacttggagcgcttaaggctattgtgaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggttgacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gagttattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaacttgaaagta
caggaaaggcagaacagagtatgtactacagtagctattgctattgtggctgaaacatgc
tcacccttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatcgctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatctggtg
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggtttggc
tgtgaggattctcttaatcacttgttaaactacgtgtggcccaacgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagtggcgattgggccc
tgcaggatgttacagtactgcttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacattggctcacaggatgctctgatagcacat
tacccaagaatctataatgatgacaagaacacctatattcgttatgaacttgattacatc
ttataa
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integrated database retrieval system
