Zonotrichia albicollis (white-throated sparrow): 102069976
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Entry
102069976 CDS
T07911
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03013
Nucleocytoplasmic transport
zab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102069976
03015 mRNA surveillance pathway
102069976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zab03019
]
102069976
Enzymes [BR:
zab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102069976
5.6.2.5 RNA 5'-3' helicase
102069976
Messenger RNA biogenesis [BR:
zab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102069976
mRNA cycle factors
Common to processing body (P body) and stress granule
102069976
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102069976
NCBI-ProteinID:
XP_005497388
Ensembl:
ENSZALG00000007470
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQ
KNRFGIPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggccggcccagggccagggg
cccccgggcgcggggcagggagctccgggcccgctggaagcgcaggtgaatggccctgat
gggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctgctggca
gagctcaacttcgaggaggatgaggaggacacctactacaccaaggacctgcctgtgcac
gcctgcagctactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacggccgtgggaacacctctggcagccacatcgtgaaccacctggtg
agagccaagtgcaaggaggtgacgctgcacaaggacgggcccctgggagagacggtgctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctctgcaggcagccctgtgccagccagagcagcctgaaggac
atcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctctcgtgg
ctggtgaagatcccctcggagcaggagcagctccgcgcccgccagatcacggcccagcag
atcaacaagctggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatattcggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcagggagatgag
atctgcctgaggtacaagggagacctggcccccctctggaaaggaatcgggcacgtgatc
aaagttcctgacaattatggtgatgagatcgccatcgagctgaggagcagcgtgggagct
cccgtggaggtcacccacaacttccaggtggattttgtgtggaaatccacttcctttgac
aggatgcagagtgctctgaaaacgtttgcagtggacgagacctcagtgtctgggtacatt
taccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccagctgccaaaa
cgcttcacagcccagggactccctgatctcaaccactctcaggtttatgctgtcaagacc
gtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaaacagtgaca
tcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctggtgtgtgcc
cccagcaacatcgccgtggatcagctgacagagaagatccaccagactggcctcaaggtg
gttcgtctgtgtgccaagagccgcgaggccatcgactcccccgtgtccttcctggccctg
cacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcagcagctcaag
gatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctgaaacgcacg
gcggagcgggagctgctcatgaacgccgatgtgatctgctgcacgtgtgtgggagctggg
gacccccggctggccaagatgcagttccgctccatcctcatcgacgagagcacgcaggcc
accgagcccgagtgcatggtgcccgtggtgctgggggcaaagcagctgatcctggtgggt
gaccactgccagctgggccctgtggtgatgtgcaagaaggcagccaaggccgggctgtcg
cagtcgctgtttgagaggctggtggtgctgggcatccggcccatccggctgcaggtgcag
taccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggctcgctg
cagaacggggtcaccgcagctgacagggtgaagaaaggctttgatttccagtggccccag
cctgacaagcccatgttcttctacgtgacccagggccaggaggagattgccagctcgggc
acctcttacctgaacaggaccgaggctgccaacgtggagaagatcaccaccaagctgctc
aaggccggggccaagcccgaccagatcggcatcatcaccccctacgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaagtg
gaaattgccagtgtggacgccttccagggcagggagaaggatttcatcatcctgtcgtgc
gtgagggccaacgagcaccagggcatcggcttcctcaacgacccccggcggctgaacgtg
gccctgacccgggccaggtacggggtgatcatcgtggggaaccccaaggccctgtccaag
cagcccctctggaaccacctcctgaattactacaaggagcagaaggtgctggtggagggg
cccctgaacaacctgagggagagcctgatgcagttcagcaaaccccgcaagctcgtcaac
accatcaaccctggtgcccgtttcatgaccactgccatgtacgatgcacgcgaggccatc
atccccggctccgtctacgaccgcagcagccaagggcgtccatccaacatgtacttccag
acccacgaccagattgggatgatcagtgccggccccagccacgtcactgccatgaacatt
cccatccccttcaacctggtcatgccccccatgccgcccccaggctacttcggccaggcc
aacggccccgctgcaggccggggggctcccaaagggaagacgggccgtggcgggcggcag
aaaaatcgctttgggatccccggcgccagccagtccaacctgcccaacagccaggccagc
caggacgtggtgtcccagcccttctcgcagggccccctgacccagggctacatctccatg
agccagccctctcagatgagccagcctgggctctcccagccggaattatcccaggacagt
taccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggactcaacttac
cagggggaacgagcttatcaacatggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
