Zonotrichia albicollis (white-throated sparrow): 102070320
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Entry
102070320 CDS
T07911
Symbol
SPG11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zab03400
]
102070320 (SPG11)
DNA repair and recombination proteins [BR:
zab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
102070320 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
102070320
NCBI-ProteinID:
XP_026654307
LinkDB
All DBs
Position
Unknown
AA seq
1793 aa
AA seq
DB search
MAAAGAPAELRVLLVPRSEQPRGAARVRLSRARHALGTVLLAGGIRLESLGPGGAGQRGS
VLPGAWADFLWDSSEDDCSQSNKTKLLALAQSHDLFVYEFNVEDGKHNPNSLHSCEAETL
KKLLEDKNISLPSISSVKILSFGNNKCKLLLNQFLLVHLAFPGEGSAPEPCGCFPLALPA
GAVGRIADSHFCRGILFLLDSAGWIYVFDCCDGASLGKVGVALGAGQGQGPAPVSPLAAL
AVSPDLSTAVVTNSCHWALAVQLNTYFRQFPEHLFCKRDPENLPVKPAEGLDEDELASSE
HSMELLPLPFRTDRSWKAHLSSLWDRVRRRRTPGSPHLVNNLNLPWYQFFTHLEDHDPEV
CEDPERMVAFVPRAVTWAASPALQGQPGAAGQQWAQIPVGAAQDMVGLECKLVTGAKAVF
VGQAQDTGLSVALWDFESQGVTCSHFGRSSAYVECSAELPLCLLLTERGLSLVLFGVTQE
EFLTRLMMFGSAGVVDSLCHLNGWERCSIPIHALEAGLENRQLDTVDLFLKSKESVFSLS
AACPGAAASQSYLRSLEELSPALDLLCSAIQDNDMEPHSKPFSEQLLNLALAFLTKQLEE
IFVHTEEPDEFLQKAADILTDYIIKLRKFLRRYPHPAVTPGHGPELDEDLPEIEESQKWE
KLTPEEVIAEAILSNKIPEAQIFFRRQKHPAESLQEFLQTGLSLVYDCLLRGSTREASEL
LRNMGLDVKQELHKICLHTQDRHVRELLVKVLQEENYFSEKEKKMIDFVHQVESFYSESF
QENKETQALSRCSSWRRQQELAGPRAVLGSQLGWGSPGAPRLTLTLSWALCWEPLLQDMV
LLPWRAQQELKSCSAEVLWMHATAQHDWLRICSWIEESEPSQAPCGSAAWPPLSPDIVDR
STLCSPYMRQDILNKLARKGIFVPSELEDFELLLQRLSCLGGVLQNPHPVPKYSSASGLD
FHAQFVLHCLEHSLQYLLYTYLDYYSLTPANCPVLGNKELQEAHPWFEFLVQCRGVASNP
RDPKMIFQASLANAQMLIPSSQGGVSSILLEGRTLLALATTVYGPGGIDQVLQNEDTEKP
LKKVDPQLLKMALTPYPKLKAALFPSCTAHGILPPDISLYHLLQSLMPFDPTKLFGWQST
NTLAVSDAWSQLPHFSSPALVSRHAVQERLHFLFYLRHGRPAFAFGTFLGQQLARSKAPR
LLMQQAAREAQLLALSCFGVPSVAAACVCFLELLGQDSLGLRVALRAASLISSHSPTRDS
LAVEKLTRLADGDKAAAAAVLTSLEEAFWDNIEQQGIKRTSSDCSRQWSLVVQFCKLHSL
ELSTSFLRECARANEWLQFLIQSQLHGHQPAQVIPLLQDFPAVLQDHLQLALGRLLGAGA
AAAAGARAGSLFHTLLEITGVLPCTISSGDRILSLATGQKQAWNPAVESQELLQLAKLCQ
DHTLVGMKLLDKISSVPRGELSCITELLILAHSLFSLTCHMEGITRVLQAARLLTEEHLA
PREEYGLLVRLLTGIGRYNEMTYIFELLHQKHYFEVLMRKKLDPSGTLKAALLDYTKRCR
PGDSEKHNMIALCFSMCREIGQNHEAAACTQLKLIECRPWEESLQDVPNLKKLLLKAVTL
FIDAAESYSKDSCVRQALRCRRQTRLITLQLHFLGSGQSTRIINLGRQELPGAILALPRF
YQAAIVAEAYEFLPDWAEVLFQQVITRGDFVYLEEFRQQRPLRPGLFEEVAKKVKQQHAP
ADAALRNLKRFLSHCEDIYTYYRLAYDHKFYDVVNSLLKDPQTGCCLNDLLSS
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccggggccccggcggagctgcgagtgctgctggtgccccgctcggagcag
ccgcggggcgcggcgcgggtgcggctgagcagggcccggcacgccctgggcaccgtgctg
ctggccggcggcatccgcctggagtcactggggcccggcggggccgggcagcggggcagc
gtgctgccgggagcctgggctgacttcctgtgggacagctcagaagatgattgttcccag
tccaacaagacaaagctgctggctcttgctcaaagccatgacctgtttgtctatgagttc
aacgtagaagatggaaaacacaaccccaattccctgcacagttgtgaggcagagacgctg
aaaaagctccttgaagataaaaatatcagtttgccttcaatttcttctgtgaagattctg
tcttttggaaacaacaagtgcaaacttctgctcaaccagtttctcctggtgcacctggcc
tttcctggggagggctcagccccagagccctgtggctgcttccccctggccctgcctgca
ggagctgtggggaggattgcagactcccacttctgcagggggatcctgttcctgttggac
agtgctggctggatttacgtgtttgactgctgtgatggtgccagcctggggaaggtgggt
gtagccctgggggctgggcaggggcagggcccagcccctgtgtcccccctggctgccctg
gcggtgtcccctgacctcagcacggccgtggtgaccaacagctgccactgggccctggct
gtgcagctcaacacctacttcagacagttccctgaacatttgttctgtaagagagatcct
gaaaatctgccagtgaagcctgcagaggggctggacgaggatgagctggccagttctgag
cacagcatggagctcctgccgctgcccttccgcacagacaggtcctggaaggcacacctg
tcctcactgtgggacagagtcaggaggagaagaacaccaggctctccacatttggtgaac
aacctgaatttgccttggtatcagttttttacccatctggaagatcacgatcctgaagtt
tgtgaggatccagagaggatggtggcctttgtcccccgggctgtcacttgggcggcttcc
ccagcactccaagggcagcctggggctgcaggacagcagtgggcacaaatccccgtggga
gcagcgcaggacatggtgggactggagtgcaagctggtgactggagccaaggctgtgttt
gtggggcaggcacaggacacggggctgtctgtggcgctctgggatttcgagtcccagggc
gtgacgtgttcccactttggcaggagcagtgcctatgtggagtgcagtgcagagctgccc
ctgtgtctgctgctgacagagcgtggtctgtccctggtgctgtttggggtcactcaggag
gagttcctgaccaggctgatgatgtttggcagtgctggggtcgtggattccctgtgccac
ctcaatggctgggagaggtgctccattcccatccatgccctcgaggcaggtttggagaat
cgccagctggacacggtggacttgtttttgaaaagcaaagaaagtgttttcagtctgtct
gcagcctgccctggggctgctgcctcccagtcctacctgagaagtctggaggagctcagc
ccagctctggacttgctgtgctcagcaatccaggacaatgatatggagccccacagcaaa
cccttctctgagcagctcctgaacctcgccctggctttcctcaccaagcagctggaggaa
atctttgtgcacacagaggagcctgatgagttcctgcagaaggctgcagatattttaact
gattacatcattaagctgaggaagttcctgaggagataccctcacccagcagtgacccca
gggcacggacctgagctggatgaggacctgcctgagatagaagagagccaaaaatgggaa
aaactgactccagaggaagtcattgctgaggccatcctaagcaacaaaatacccgaggcc
cagatcttcttcagaaggcagaaacaccctgctgagagtctgcaggagtttctgcagaca
ggcttgagcctggtctatgactgcctgctgaggggcagcaccagggaggcctcagagctg
ctgaggaacatgggcttggacgtgaagcaggagctgcacaagatctgcttgcacacccag
gacaggcacgtcagggagctcctggtgaaagtcttacaagaagaaaattacttttctgaa
aaagagaagaaaatgattgactttgtgcatcaggttgaaagcttctactcagaatccttc
caggaaaacaaagagactcaggctctttccaggtgcagcagctggaggaggcagcaggag
ctcgctgggccccgggcagtgctgggctcccagctgggctggggcagccccggcgccccc
cggctcaccctgaccctcagctgggccctctgctgggagcccctgctgcaggacatggtg
ctgctgccctggagagcacagcaagagctcaagagctgcagtgctgaggtgctctggatg
cacgcgacagcccagcatgactggctgaggatttgttcctggattgaggagtcagagccc
agccaggctccgtgtggcagcgctgcctggccccccctgagccctgacattgtggacagg
agcactctgtgcagcccctacatgagacaggacatcctcaacaagctggccagaaaggga
atttttgtcccttctgagctggaagattttgagctgctgctccagaggttgtcgtgcctg
ggaggagtcctgcagaatcctcaccctgttccaaaatacagctctgccagtggcctggac
ttccacgctcagtttgtcctgcactgcctggagcacagcctgcagtacctgctctacact
tacctggactattacagtttaacccctgcaaactgccctgtcctgggtaacaaggagctg
caggaagcacatccctggtttgagttcctggtgcagtgcagaggggttgccagcaatccc
cgagatcccaagatgattttccaggccagcctggccaacgctcagatgctgatccccagc
agccaggggggtgtgagcagcatcctgctggagggcaggaccctgctggccctggccacc
acagtctatgggcctgggggcattgaccaggtccttcagaatgaagatacagaaaaacct
ctgaagaaagttgatccacagctcttgaagatggccttgaccccttaccccaagctcaag
gctgctctctttccctcctgcactgctcatgggattttgcctcctgacatctctctgtac
cacctcctgcagtcattaatgccctttgatcccacaaaattgtttggctggcagtcaaca
aacactctggctgtgtcagatgcctggagccagctgccccacttctccagccccgcgctg
gtgagcaggcacgccgtgcaggagaggctgcatttcctgttctacctgcgccacggccgg
cccgccttcgccttcggcaccttcctgggccagcagctggccaggagcaaagcccccagg
ctgctgatgcagcaggcggctcgggaggcccagctgctggccctgagctgctttggtgtc
ccctcggtggctgcggcctgcgtgtgcttcctggagctgctgggccaggacagcctgggg
ctgcgggtggccctgagggctgccagcctcatctccagccacagccccacccgggactcg
ctggcagtggagaagttaacgaggttggctgacggtgacaaggcggcagcagcagcagtc
ctgacctccttggaagaggctttctgggataacattgagcagcaaggcataaagaggaca
tccagtgactgcagccggcagtggtccctggtggtgcagttctgcaagctgcacagcctg
gagctgagcacgtccttcctgagggaatgtgccagagccaacgagtggctgcagttcctg
atccagagccagctccacggccaccagcccgcccaggtcattcccctgctgcaggatttc
cctgccgtgctccaggatcacctgcagctggccctggggaggctgctgggagctggggcc
gctgctgcagccggggcccgtgcagggagcctgttccacaccctgctagaaataacagga
gttctcccctgcacaatcagcagtggtgacagaattctctctctggccacagggcagaag
caggcttggaaccctgcagtggagagccaggagctcctgcagcttgccaagctgtgccag
gatcacaccttggttgggatgaagttgctggataaaatctcctctgtcccccgtggggag
ctgtcgtgcattacagagctgctgatcctggcccacagcctcttcagcctgacgtgccac
atggagggcatcactcgggtgctgcaggcggctcggctgctcaccgaggagcacctggcg
cccagggaggagtacgggctgctggtgcgcctgctgacgggcattggcaggtacaatgag
atgacctacatcttcgagctgctgcaccagaaacactacttcgaggtgctcatgaggaag
aagctggacccgagcgggacgctgaaggcggcactgctggactacaccaagcgctgccgg
cccggcgacagcgagaagcacaacatgatcgcgctgtgcttcagcatgtgcagggagatc
ggccagaaccacgaggctgccgcctgcacccagctcaaactcatcgagtgccggccctgg
gaggagtctcttcaggatgttccaaatttaaagaagctgctgctgaaagctgtgactctc
ttcattgatgcagcagagagttactccaaggactcgtgtgtgcggcaggcgctgcgctgc
cgccgccagacgcggctcatcacgctgcagctgcacttcctgggctcagggcagagcacc
aggatcatcaacctgggcaggcaggagctgccaggagccatcctggccttgcccaggttc
taccaggcagccatcgtggccgaggcctacgagttcctgccggactgggctgaggttctg
ttccagcaggtgatcaccaggggggactttgtgtacctggaggagttccggcagcagcgg
ccgctgcggcccggcctcttcgaggaggtggccaagaaggtcaaacagcagcacgcccct
gctgatgctgccctgcggaacctgaagcggttcctcagccactgtgaggacatctacacc
tactacaggctggcctacgaccacaagttctacgacgtggtgaactccctgctgaaggac
cctcagactggctgctgcctcaacgacctcttatccagctga
DBGET
integrated database retrieval system
