Zonotrichia albicollis (white-throated sparrow): 102071367
Help
Entry
102071367 CDS
T07911
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zab03021
]
102071367 (SETX)
Enzymes [BR:
zab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102071367 (SETX)
5.6.2.5 RNA 5'-3' helicase
102071367 (SETX)
Transcription machinery [BR:
zab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102071367 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
DUF4164
Motif
Other DBs
NCBI-GeneID:
102071367
NCBI-ProteinID:
XP_014127569
Ensembl:
ENSZALG00000015656
UniProt:
A0A8D2NDJ1
LinkDB
All DBs
Position
Unknown
AA seq
2815 aa
AA seq
DB search
MSTCRWCTQSGADTTEFLRHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREECPRLHE
DLWDLETSRLIAHMEKSMNEEAGEDELFLVDEHGETPLSGYVGPNFENNLRVPLLEILKY
PYLLLHEKVSELCVEVLCRMELSQDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLGK
VDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWLG
ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL
GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFMRTKAEPQSDYGDDMMSCSQIVYNY
NTEKPQKDTGWKAAICPEYCPYMYEDMQTLANMLQSDIGRDIRVHHSTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIKDILIERFQECDKISEFFLLILVSIVELHRSKKCLHLLW
ISSQEWVEAVVRCATLPSRAFTRCSEKAPGLFAKGSAAGSLQAPSSVQHACVQLIRSLLK
EGYQLGQHALCKHYLDKLNLLLRGNRAVGWQLSSQETQELQMCLKQVIRSIKGKALSSSL
AGGSKSSSTALPSVSTKQERNVCDDGYKMSGHERRDLCSPFVMSKEGRDCQENPLHRRKN
AWEEECRDACRSSTSCTSTGGLLMNIKKEPNDLTDQEFVFPQNSLATKVCGKVQENRSSD
LVAGKCNTDDQCFSSNTEHSDFRRGRELEVKHRAESKTPYLSAQTHLDSPSSRSCKSMQE
TGANSGFQSRLVPTKQVSKEPSLDSSNSSRNEAGVPGKEDDSSLLLGHNDTSLKKVSTEE
KSGPSLLSFFKRSTNVQTSNQEQPNLNDLDKYDCKNQFSETSCRDKTSACGYFPFSSENK
RDVIRPLSVKQESSDRLFEFSEYFRRETSSVGKKEENFVKTVSEDDDSSDSQVDRELSKL
SLAAYAKSLNFPVASNQESSVYQNVSDIKRKVKGSVRSSNEGQSTKCPSGGDHPSNQVIV
ISDSSDEEKSVAEKEESKTKNENVCAEPSSTSSSTSDSDTKRESKSPGSPLLLDDCESQY
FEFETEDEVFSAWQDTQAYAVEATQEYKQDGVSPAPETGNSHDCQNDNLNDWGYDLPYFS
DEAMEEAASSIEKQTEDASYQKGAGDTKEAINSILEESVGKEEAKAQLEKCADKDTAKGF
TLDSKGPEPTTSTSPISLASKLALKKKSTSPQKPTAKCKSAPAVQRSPKKPPVVKAAKNK
PPLQSTTERCQAGRSMPAVVPPRKVRQSPAPASTAEKLGLKKGPRKAFDLSQPSLESLAL
LRSHGKAAGRIGVTQKKRTKQIEAQRLSVKGNKKLLACQDRQYLKSRRSVKKSVGSWESR
NKVTKTCAKPVVQKAQSFELGAIKEFEHQREKKKEEAACSSASERKFESLCVEEVANSSK
MPRSSDWNSKWEGSSVVVPPVPMDSSLSSTALEGDKDEPSGKGCTVLPECEMKTSKQNGC
KSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDAAMGSKSPEEMGVDESLQQNEVSAAV
KCKDKECMEQVEKPGEYCSKHPATSPGADHVFAKPSLPPPKTKKPSTAKIFSSASSSRNA
AFSKDLEDGTKFPPPSKSKVSAAKPPVLRPPMYPKPAPAGNPTCKSPTFKPLSSSNVLQS
QNKRYDNASNISRGPGRETSSSFLGQQRDYSIFVNQVLKWTYEMFENFSYFGTPNHLLQT
IVAAVPPHFQGYNEYFDTFFPLMMLNAFETLAQEWVENQKVREKGYYFYLENFSADMNTA
HFTAHLRESDLARQLHPKEDDLILLKVHKQKDTFGEESGLEYHTVNHVGFVTRFARASGC
ANGQKEQQTACHLTVQTQGNLSFFIHKQVKCVVVGSLVTTHRTFKGLLLLSRSPLVRPII
NPSYNDFCPRDLPVASGSAVSYMNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTG
KSKTIVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMKKIIISFKEKC
QNKQEPLGNCGDIKLVRLGPEKSINNEVRGFSLDKQVEHRMKRKPGDCDQDIQKKKEALD
QKLDLLSRERAMHRCEKRESQMLNDEIGKLAKERQQLASQLKEARVHSQKVQADIILESD
IICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLILVGDPK
QLPPTVKSVKAQQYGYDQSLMARLQKHLEEQVQRNVLHSLPVVQLTVQYRMHPDICLFPS
NYVYGRTLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPREVKLVMELIRT
IKEKRKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSPGEVDTVDAFQGREKDCIIVSC
VRANSSEGSALPHLQANSTKGSIGFLASLQRLNVTITRARFSLFILGRLQTLMGDENWNH
LIQDAQKRGAIIRTTEKNYKKEALRILKLRPPGQPPAKGGTVTSPVVQAASSSGKRSEPG
NSGSSPRELAAGPGHAVPQGSRGPTQPAGAADSNRGSAPASLGAPAAVPRSVSAPAATDS
RRVSAPAAVGAPAADSRRSSTPASVGAGAADCRRSSAPAPLGTPSADPKRSSSVPAPSGV
PAADSRRSSAPAPSGTSSADPKRSSSVPAPSGAAALGAIPEKPRDPRLASLATRAEGKGK
EQPLRSAQSTPGSAAQQGLHVSPAARDWVCRTESARRAQQAAGQGSVLPPAPPSGQHEGD
QRAAVSKSASRAPREGAQSSGSEWNKDSRGVCRRPSQESPESSESSSAKRRKFFH
NT seq
8448 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgcacacagagtggtgctgacaccaccgagttcctgaggcac
tatgctgctcagaggctgtcccaggaagattttgaaggctccaatgatgacctctgttac
tgcctggagtgtgtggttgaataccacaaagcaagggaagaatgtccaagattgcatgag
gacctgtgggatttggaaacctcccgtctcattgcccacatggagaaatccatgaatgag
gaagcaggagaagatgagctgtttctggttgatgagcatggggagacacctctgtctggt
tatgtgggcccaaattttgagaacaacctgcgagtgcccctgctggaaatactgaaatac
ccctacctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctctgcagaatg
gaactaagtcaagactcctttcaggtctttgagaaatatccaggaatttatctctttttg
gtccacccaaatgaggtgattcgtcgatgggccatcctaacagcaaggaatttgggaaag
gttgacagggatgattactatgacttagaggaagtgctgacttgtttgttcaaagttatt
gagttggggctttttgagaacccagatatttacagctcttcaatgtttgaaaagggtaaa
ctcatccttctgccagctcatttgtatgacacagccaactacaagaactattggctggga
atttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttactgggccca
gacaaacaaaatgatttcatgcagtctatacttcacactatggagaaagaagcagctgat
gattccactgaccccttctggcctgccctacactgtttcatggttattttggatcagctg
gggtctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatcaac
agtgtcagctacaacaacgaaatcaaaaatattcgcagtagttttatgaggacaaaagct
gaaccacaatcagactatggtgatgacatgatgtcctgcagtcagattgtatataattat
aacacagaaaagcctcaaaaggacactggctggaaggctgccatttgccccgagtactgc
ccctacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacataggcaga
gacatacgtgtccatcacagcacattcctctggttcatcccttttgttcagtccctcatg
gatctcaaggacttgggcgtagcctatatagtagaggtcatccactacctctgctccgaa
atcaaagacatcctcatcgaacgattccaggagtgcgacaaaatctccgagttcttcctc
ctcatcttggtgtccattgttgagctgcacaggagcaagaagtgcctgcacttgctgtgg
atcagctcccaggagtgggtggaggcggtggtgaggtgtgccacgctgcccagcagagcc
ttcactcgctgcagcgagaaggccccggggctgtttgccaagggctcggccgcgggctcc
ttgcaggcgcccagctcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag
gagggctaccagctcggccagcacgccctctgcaagcactacctggacaaactgaacctc
ctcctgcggggaaatcgagctgtgggctggcagctgagcagccaggaaacccaggagctg
caaatgtgcttaaagcaagtgataagaagtataaagggcaaagcactgagcagctctttg
gctggagggagcaagtcaagctcaacagctttgccgagtgtctctacaaagcaggagagg
aatgtgtgtgatgatggatacaagatgagtggacatgagaggagagacctttgttcaccg
tttgtcatgtcaaaggaaggcagagattgtcaagagaaccctttgcataggagaaagaat
gcctgggaggaggaatgtagagatgcatgtagaagctcaacatcttgcacatccacagga
ggcctcttgatgaatattaaaaaagagcctaatgacttgacagatcaggagtttgtcttc
ccccagaactctttggcaacaaaagtatgtgggaaagttcaggaaaataggagctctgac
cttgtggcagggaagtgcaatacggacgatcagtgcttcagttcaaatactgagcattca
gatttcaggagaggcagagagttagaagtgaaacacagagcagaatccaaaacaccatat
ctgtctgctcagactcatcttgactctccatcttcaaggagttgcaaaagtatgcaagag
acaggtgcaaacagtgggttccagtccagactggtccccactaaacaggtgtccaaggaa
ccatcactggattcctctaactcctctagaaatgaagctggtgtgccagggaaggaagat
gacagtagtttgcttttagggcataatgacacctcactgaaaaaagtatcaacagaagaa
aaatcaggtccatcgttgctgtctttctttaagaggagcactaatgtgcaaacttcaaac
caggagcagcctaatttaaatgatttggataaatatgactgcaaaaatcaattttcggag
acctcttgtagggataaaacttcagcatgtggttattttccatttagctctgaaaacaag
agggatgtgatcaggccactgtcggtgaagcaagaatcaagtgacaggttgtttgagttt
tcagaatatttcaggagggaaaccagttcagtggggaagaaagaggagaattttgtgaag
acggtttctgaagatgatgattcatcagactcccaggttgatagagaactcagtaaatta
tctttagctgcttatgccaaaagtcttaattttcccgttgcatccaaccaggaaagctca
gtgtaccaaaatgtgtctgatattaaaaggaaagtgaaaggttctgtaagatcttccaat
gagggccaaagtaccaagtgtcccagtggtggtgatcaccctagcaatcaagtcattgta
atttcagactcttctgatgaagaaaaaagtgtggctgagaaggaggaatcaaaaaccaag
aacgaaaatgtgtgtgcagagccatcttcaacttccagcagcacttctgatagtgacact
aaaagagaatcaaagtctccaggctctcccctgttactggatgactgtgagtctcagtat
tttgaatttgaaacagaagatgaggttttttcagcttggcaagacactcaagcatatgct
gtggaggcaactcaggagtacaaacaagacggtgtttcaccagcacctgagacaggtaat
tcacatgactgccagaatgataacttaaatgactggggctatgatctgccttactttagt
gatgaggccatggaagaggcagcaagctcaatagaaaagcagacagaagatgcttcttat
cagaaaggagctggtgataccaaagaagcgattaactcaatcttggaagaatcagttggc
aaggaagaggcaaaagctcaactggagaaatgtgcagacaaagatactgctaaaggcttc
accctggactcaaaagggcctgaacccacaacatctacatctcccatctcattagcttca
aagctggcccttaagaaaaagagcacaagcccacagaagcccacagcaaaatgtaaatca
gcaccagctgttcagagaagtcctaaaaaacctcccgttgttaaagcagccaaaaataaa
cccccactgcaaagcacaacagaacgttgtcaggctggcaggtcgatgcctgctgtggtt
cctccgaggaaggtccggcagagccctgctccagcatcaactgcagaaaagcttggcctg
aagaaggggccccgcaaggcgttcgatttgtcacagccctccctggagagcctggccctg
ctgcgcagccacggcaaagctgcgggcaggattggagtcacgcagaaaaagagaaccaag
cagatcgaggctcagcgtttgtctgtgaaagggaataaaaaactgctggcctgccaagac
cgccagtatctaaagtccaggagaagcgtgaaaaaatctgtgggaagttgggagagtaga
aacaaagttaccaaaacgtgtgcgaaacctgtggtacaaaaggctcaaagttttgaactg
ggagctattaaagaatttgaacaccaaagggagaaaaaaaaagaggaggctgcttgttct
tctgccagtgagagaaaatttgagagcctctgtgtggaggaggtggcaaattcctctaaa
atgcctcgttcttcagactggaacagcaaatgggagggtagcagtgttgtggttcctcct
gtccctatggattcaagtctctcttccactgcacttgaaggtgataaagatgagccttca
ggaaaaggttgcactgtcctgcctgagtgtgagatgaaaacatcaaagcaaaatgggtgt
aaatcagatgaaagcagtgatgaaggtgatgataatctgtttttaactcagttagatcct
gtggatatggagttatgttctcaggaggaaagtgttcaagatgctgccatgggtagtaag
agcccagaggaaatgggtgttgatgaaagccttcagcagaatgaagtctcagctgctgtg
aagtgtaaggataaagagtgtatggaacaggtggagaaacctggagagtactgcagtaaa
cacccagccaccagcccaggggcagaccacgtgtttgccaagccttctctcccaccacct
aaaacaaaaaaaccttccactgccaaaattttcagctcagcaagttcttcacggaacgca
gccttcagcaaagatctggaagatggcacaaagtttcccccaccttcaaaaagcaaagtg
agcgcggccaaaccgccggtgctcaggccaccaatgtatcccaaacctgcaccagcagga
aatccaacctgcaaatctccaactttcaaaccccttagctccagcaatgttctccagtca
caaaataaacgctatgacaatgcttcaaatatttccagagggcctggccgagaaacctcc
tcctcttttcttggccagcagcgcgattacagcatttttgttaaccaagtcctaaagtgg
acttatgaaatgtttgaaaacttcagctactttggaactccaaatcatcttctgcagacc
atagtagctgctgttcctccccattttcagggctacaatgagtattttgacacatttttt
cccttgatgatgctcaatgcctttgaaacactggcacaagaatgggtagaaaaccagaaa
gtaagagagaaaggttattacttctacttagagaacttttctgctgacatgaatacagca
cattttacagctcatctacgagagagtgatttggcaaggcagctccatccaaaggaggat
gacttaatccttttgaaggtgcacaagcagaaggacacttttggggaagaaagtgggctg
gagtaccacacagtgaatcatgttggctttgtgacacgttttgctcgtgcatctggctgt
gcaaatggacaaaaagagcagcagactgcctgtcatcttactgtgcaaacccaaggcaat
ttgtcatttttcatccataagcaagtgaagtgtgtggtggttggctccttggtgaccaca
cacagaacattcaaaggtctcctgctgctgagcaggagccccctggttagacccatcata
aatccaagttacaatgacttctgtcccagagatctgcctgttgcctcaggaagtgctgtt
tcatatatgaatgaatacaatgaagatcagaagagagccattgagacagcttatgccatg
gtaaagcagcacccaggactgcccaagatctgccttatccatggacctcctgggacaggg
aaatcaaaaactattgtgggactcctgtcccgtgttttgagagaaaacactaggaatgag
aaaacagctcggaaaaagaattccaagattaagccaaaccgttttctagtgtgtgcacca
tcaaatgctgctgttgatgagctcatgaaaaaaatcatcatttcatttaaggaaaaatgc
caaaacaaacaggagcctttgggaaattgtggtgatatcaaattagtgcgacttggtcct
gaaaaatcaatcaacaatgaagtgaggggattcagcctggataagcaagttgagcacaga
atgaaaagaaagccaggtgactgtgaccaggacattcagaagaagaaagaagctctggac
cagaagctggacctgctctctcgagagcgtgccatgcacagatgtgagaagagagagagt
caaatgttaaatgatgaaattgggaaacttgcaaaggagagacaacaactcgcttctcag
ctaaaggaggctcgtgtgcactcgcagaaggtgcaggcagacatcatcctggagtctgac
atcatctgctgcacgctgagcaccagcggcgggagcctgctggaatcggccttctcccgc
cagggcctggaccccttcagctgtgtcatcgtggatgaggcagggcagtcctgtgaggtg
gaaaccctgatcccactgatccatcgctgtaataaactcatcctggttggagatcccaaa
cagctccctcctactgtcaaatcagtaaaagctcagcagtatggctatgaccagtctctg
atggcccgactgcagaagcacctggaggagcaagtgcagaggaacgtgctgcacagcctg
cccgtggtgcagctgacagtgcagtacaggatgcacccagacatctgcctcttcccatcc
aactatgtctatggcaggactctaaaaactgccaaggcaatagaggagaacagatgttct
tcagaatggccattccagccctacctgatttttgatgtagctgatggtcgtgaggagcga
gacaatgactcttacagcaatcctcgggaagtgaagctggtgatggagttaattagaaca
attaaggaaaagaggaaggatctgggccttcgtcgcattggaataattaccccttacagt
gcacagaaaaagaaaatccaggaacagctggacagtgtgtttaagaataacagcccagga
gaggtggacacggtggatgcgttccagggccgggagaaggattgcatcatcgtgtcctgt
gtgagggccaacagctccgagggctctgctctgccacacctgcaggcaaacagcaccaag
ggatccattgggttcctggccagcctccagcgcctgaatgtcaccatcacccgagcccgc
ttcagcctcttcatcctgggccggctgcagacgctcatgggagatgaaaactggaatcac
ttgattcaggatgctcagaaaagaggcgccattattagaacaacagaaaaaaattacaag
aaagaagctctcaggattttgaagctcaggccaccaggacaacccccagccaaaggaggg
actgtgacatctcctgtggtgcaggctgcttcttccagtggcaagaggagtgagcctgga
aattctgggagcagcccacgagaacttgctgctggccctggccatgctgtgccccaagga
agccgagggcccacacagcctgcaggggctgcagattccaacaggggcagtgcccctgca
tctcttggggctccagctgcagttcccaggagtgtcagtgcccctgcagcaacagattcc
aggagggtcagtgcccctgcagccgtgggggctccagcagcagattccaggaggagcagt
acccctgcatctgttggggctggagctgcagattgcaggaggagcagtgcccctgcacct
ttggggaccccatctgcagatcccaagaggagcagcagtgtccctgcaccctcgggggtt
ccagctgcagattccaggaggagcagtgcccctgcaccctcagggacctcatctgcagat
cccaagaggagcagcagtgtccctgcaccctcgggggctgcagcacttggtgccatccca
gagaagccccgggaccccaggctggccagcctggccactcgagctgaaggcaaagggaag
gagcagcccttgaggtcagcccagagcacgccaggatctgcagcacagcaaggcctgcac
gtgtccccagctgccagggattgggtgtgcagaacagaaagtgccaggagggcccagcag
gcagcaggacagggcagtgtgctgcccccagcccctccctcgggccagcacgagggtgac
cagagagcagccgtgtccaaaagcgcttccagagcccccagggagggagctcagagcagt
ggcagtgagtggaacaaagactctcgtggtgtgtgcaggagaccatcccaggaatcacca
gagagctcagaatcaagctctgccaagagaagaaagttctttcactga
DBGET
integrated database retrieval system
