Zonotrichia albicollis (white-throated sparrow): 102071553
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Entry
102071553 CDS
T07911
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zab03041
]
102071553
Enzymes [BR:
zab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102071553
Spliceosome [BR:
zab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102071553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
HA2_N
Ank_2
Motif
Other DBs
NCBI-GeneID:
102071553
NCBI-ProteinID:
XP_026653525
Ensembl:
ENSZALG00000010041
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MPVLLNLIPQFILDDCYKNGTPCRVFCTQPRRLAAVAVAERVAAERREKIGQTIGYQIRL
ESRVSPKTLVTFCTNDMLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQN
QNNLKLIISSAALDADLFIRYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYK
KEKQQEEKQKSTLAEWCSAQESTNKLTSRRQKSVPRANEEYKWLDEGGDTVFNQLTEKDV
NCLEPWIVKEMDSCLSDIWLHKDIDSFAQVLNLILTENVSVDYRHSETGATALMISSGRG
FLSQVEQLISMGASIHCKSSNGWMAVDWARCFGQTEVVDLLESYSASFGFGNLDESSLVQ
KSGSDLSAEDRELLTAYHHSFDDEKVDLDLIMHLLHSICHSCDAGAILIFLPGYDEIVSL
RDRILFDDKRFADNAHRYQVFMLHSSVQTLDQKKVLETPPSGIRKIILSTNIAETSITVN
DVVFVIDSGKVKEKSFDALSRVTMLKMGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQ
NMLEFQSPELLRMPLQEICLYTKLLAPINCPIVDFLMKAPDPPPAVTVRNAVHMLKTIDA
MDPWEDLTELGYHLTELPVEPHLGKMVLYAVVLKCLDPVLTIACALACQDPFVLPTLASQ
KRAAMLCRKRFAAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRT
QLLGQLRASGFVRARGGADIRDVNTNSENWAVIKAALVAGMYPNLVHVDRESLVLTEPKE
KKVRFHPTSVLGQSQYKKIAPANGQAAAIQALPTDWLIYDEMTRAHKTANIRCCSVVTPV
TVSLFCGPARLPSNALQASSSFRGGGVSNDSSDSEMEDKTTANLALLKLDEWLHLKLDPE
AAGMLLQLRQKWHSLFLRRMRAPSKPWSQVDETTVRAITAVLSAEEQSAGLQQPSGIGQR
PRPVTCEELPLASTWKSTNSRRSSTETELSDSSNAEKVSVKSTSPALHQPKKYKEKDILL
SKRSSDDRSAQSSVKPADSSSYSSPSASPSSPVSGKGCKSPSPRQNMPVRYFIMKSSNLQ
NIDISQQKGIWSTTPSNERKLNGAFWESSVVYLIFSVQGSGCFQGFARMGSAIGCEKSQD
WGSAGFGGVFKVDWIRKESIPFQFAHHLLNPWNDSKKVQISRDGQELEPQVGEQLLQLWD
RIPLSGKKLTEHTK
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgctgttgaatctgatccctcaatttatcctcgatgactgctacaagaatgga
actccctgtcgtgtgttttgtactcagccaagacgtttagcagctgttgctgtggctgaa
cgagtggctgcagaaagaagagagaagattggccagacaattggttaccagatccgttta
gaaagcagggtttctccaaagaccctggtaacattctgcactaatgacatgctccttcgc
acactgatggcaggagacagcaccctctccaccgtgacccacgttattgtggatgaagta
catgagagggataggtttagcgacttcctgctaataaaactgagagacgtgctgcaaaac
cagaataatttaaaactaattatttctagtgctgctttagatgcagatctctttattaga
tattttggaagctgcccagtaatacatatccaagggagaccttttgaagttaaagagatg
tttctggaggacattttacgaagcactgggtatacaaacaaagagatggtgaagtacaaa
aaagagaagcagcaagaagagaaacagaagagcactcttgctgagtggtgttcagctcaa
gaaagtacaaacaaactgacatctcggagacaaaaatcagttccaagggcaaatgaggag
tacaaatggttggatgagggtggtgacactgtcttcaatcaactgactgaaaaagatgtg
aattgccttgaaccatggatagtaaaagaaatggattcctgtctttctgacatctggttg
cataaagatattgattcatttgctcaggtgttaaatcttattttaactgaaaatgtcagt
gttgattataggcacagtgaaactggtgcgactgctctgatgatttcttcagggagaggc
tttttgagtcaagtagaacagttgatcagtatgggagcaagtatccactgcaaatcatct
aatggctggatggctgtggactgggctaggtgctttggacagacagaggttgtggatctg
ttggaatcctacagtgcttcatttggatttggaaatcttgatgaaagttccctggtccaa
aaaagtggtagtgaccttagtgcagaggacagagaactactgacagcttatcatcacagt
tttgatgatgaaaaagtggatctggatctgataatgcacttacttcacagcatctgtcat
agttgtgatgcgggagcaattttaatatttcttcctgggtatgatgagatagtgagcctg
agggaccgcattctttttgatgacaagagatttgctgataatgctcacagataccaagtt
ttcatgcttcattcaagtgtgcagactttggatcagaagaaagtgcttgaaactccacct
tctggcatccgcaaaattattctttctactaatattgcagaaaccagcataacagtcaat
gatgtcgtgtttgtcattgactctggcaaggtgaaagagaagtcttttgatgcattgagt
cgtgttacaatgctaaaaatggggtggatttcaaaagccagtgctatccagagaaagggc
agggctgggcgctgtcagcctggagtctgttttcgtctcttcagcaggctccgatttcag
aatatgttggaatttcagtctccagaacttctcagaatgccgcttcaggagatttgtttg
tacacgaaacttctggctccaattaattgtccaattgtagactttctcatgaaagctcct
gatcctccacctgctgtaactgtgagaaatgctgtgcatatgcttaagaccatagatgcc
atggacccttgggaagatcttactgagcttggttatcacctcactgaattacctgtagag
ccacaccttggtaaaatggtgttgtatgctgtagttctgaagtgcctggatcctgtcctg
accattgcctgtgctcttgcctgccaagacccctttgtgctgcccacgctggcctcccag
aagcgtgcggccatgctgtgcaggaagcgtttcgctgccggaaccttcagtgaccacatg
gccctgctcagggctttccaggcatggcagaaggcacgcagtgatggctgggagagagcc
ttctgtgaaaagaacttcctatcccaagccacaatggaaatcattgtaggaatgagaaca
cagttgcttggccagcttagagcctcaggttttgtgagagccagaggaggagctgatatt
agagatgttaatactaactctgagaactgggctgtaattaaagctgccttagtggctggg
atgtatcccaatcttgtgcatgtagacagagaaagcctggtgttgactgaaccaaaggag
aagaaagtgcgatttcatcctacctctgttcttggtcagtctcagtataaaaagattgcc
ccagcaaatggacaagctgcagccatccaggccctccctacagactggcttatatacgat
gaaatgacaagagctcacaagacagcaaacatcaggtgctgctctgttgtgacacctgtc
accgtgtccctcttctgtggaccagccaggctgccaagtaatgccttgcaggcatcttca
tcctttcgaggaggaggggtatctaatgatagcagtgacagtgaaatggaggacaaaaca
actgctaatctggcactactgaagctggatgaatggctccatctcaaactggaccctgag
gctgctggtatgctgttgcagctcaggcagaagtggcacagtttgttcctgcgtcgtatg
cgagctccttctaaaccgtggtctcaggttgatgaaacaactgtaagagcaattacagct
gttctgagtgctgaagaacagtctgcaggtctccagcagccttcaggaatcggccagaga
ccaagacctgtgacttgtgaagaacttcctttggcatctacatggaagtccaccaacagc
agaagaagctcaacagaaacggaattgtctgactcctctaatgctgaaaaggtttcagtg
aaatctacatctcctgcactccaccagccaaagaagtacaaagaaaaagacattttgctc
tccaaacgatcctcagatgacagatcagctcagtcctcagtgaagcctgcagacagcagt
agctattccagccccagtgctagtccttcttctccggtgtctggaaagggttgcaaatct
ccttcaccaagacaaaatatgccagttcgatactttataatgaaaagtagcaacttgcaa
aacattgatatatctcaacagaagggaatatggtccactacaccaagtaatgaacggaaa
ctgaatggagccttttgggagagcagcgtggtttacttaatattttctgttcaagggtct
ggatgctttcagggttttgctagaatgggttcagcgattgggtgtgagaaaagtcaagac
tggggatctgctggttttggaggtgtatttaaggtggactggatcagaaaagaaagcatt
ccttttcagtttgcacaccatttgctcaacccatggaatgacagtaagaaagtacagata
agtagggatggccaggagctggaaccacaagttggagagcagttgctgcagctttgggac
cgtattccattgtcaggaaaaaaactgactgagcacaccaagtaa
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integrated database retrieval system
