KEGG   Zonotrichia albicollis (white-throated sparrow): 102071977
Entry
102071977         CDS       T07911                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
zab  Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03013  Nucleocytoplasmic transport
zab03015  mRNA surveillance pathway
zab03040  Spliceosome
zab05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:zab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102071977 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102071977 (ALYREF)
   03015 mRNA surveillance pathway
    102071977 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    102071977 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zab03019]
    102071977 (ALYREF)
   03041 Spliceosome [BR:zab03041]
    102071977 (ALYREF)
Messenger RNA biogenesis [BR:zab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102071977 (ALYREF)
    TREX complex
     102071977 (ALYREF)
Spliceosome [BR:zab03041]
 Complex C
  Other components
   EJC/TREX
    102071977 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102071977 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication F07F6_N YHR127W_C RRM_occluded
Other DBs
NCBI-GeneID: 102071977
NCBI-ProteinID: XP_014128682
LinkDB
Position
Unknown
AA seq 193 aa
MARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQE
LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQ
IDTQRRPAQSVNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELD
AQLDAYNARMDTS
NT seq 582 nt   +upstreamnt  +downstreamnt
atggcccggggcggcggcaggaaccggcccgcgccctacagccggccgaagcagctcccg
gagaagtggcagcacgacctgttcgacagcggcttcggggcgggggccggcgtggagacc
ggcggaaagctgctcgtctccaacctggacttcggcgtctcggatgcggacatccaggag
ctctttgcagagtttgggaccttgaagaaggcagctgtgcactatgacaggtctggccgc
agcctagggacggcagacgtgcatttcgagaggaaggctgatgcactgaaggccatgaag
cagtacaacggggtgcccttggacggccgccccatgaacatccagctggtcacgtcacag
atcgacacgcagcggagaccagcacagagtgtaaacagaggtggcatgaccaggaaccgc
ggggtcttggggggatttggaggtggaggcaacaggcgagggactcgtggcgggaacaga
gggagaggcagaggagctggaagaacttccaaacagcagctctctgcagaagaactagat
gcacagctggatgcttacaatgccaggatggacaccagctaa

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