Zonotrichia albicollis (white-throated sparrow): 102072139
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Entry
102072139 CDS
T07911
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102072139 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zab03019
]
102072139 (EDC4)
Messenger RNA biogenesis [BR:
zab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102072139 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102072139 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
102072139
NCBI-ProteinID:
XP_005489949
Ensembl:
ENSZALG00000012777
UniProt:
A0A8D2N0M2
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGAAL
AKPVHRSISLGALQDKQVICLSGDDSSTCLVISAKDVEVVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDSEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGKPLSCLLFCDNHKKQD
PEVPFWRFLITGAEQNRELKMWCTVSWTCLQTVRFSPDIFSSMNIPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EETDSLSVEGAQGTGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPAHGSH
EEFAFPDHMADLGTEGLGSEKESVHGSQPDLRRIADLPVPADFLSLSSDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAAPALPGEALEPGHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
AQRLPVKDWKVKASPRASPKLKRKGKKDDGDMNQSPRSSNNQVTAEFQEEVMCILRSQQR
ELSELRQTQVELLQRLTDHLDAIQSSLMGHMERVIDSQHEQEQRRLERVLLEGQQRNGQL
QEQLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPTVSQLSNTIATKLTAVEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKVREQEVREPLLGQLRQLLSALQSSTEQLASSVTASVHAE
LQHQLHLIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
PLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggccgggaggttcggtgaatgagaaccagaggccatcgaattcgtacaac
ggggacctgaatgggctgctggtgcctgacccccttgggagcggggatggggctgctttg
gccaagcctgtgcatcgcagcatctccctaggagccctgcaggacaagcaagtcatctgc
ctttctggtgatgacagctccacgtgcttagtgatatcagcaaaagatgtggaggtagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cctgttgctagatatgactgggagcagaagtactattatggcaatctgatagctgtctcc
aactcttacctggcttatgccattagagctgccagcaatggctctgccatggtgcgggtg
ttgagtgtgagcactgctgagcggaccttgctgaagggattcacgggaggtgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
tttgtctggcgcctggccatggataaagaaaaaatccaagaggagatcctggttaacatc
aagaggcctgacaacacccccctgaacaccttccggagaatcatctggtgccccttcatc
cccgacgacagcgaggagagcggcgaggagggcagccagaccctggcattgctgcacgag
gacagggcagaggtatgggacttggacatcatccgaaccaacaacagctcctggccagtg
gaagtgcctgacatcaaagaaggcttcattgtggtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgagggacaggatgagccaaggtgtcttcatgagtggaaa
ccccatgatggtaaacctctttcctgcctgctcttttgtgacaaccataaaaaacaagac
ccagaagttcccttctggaggtttctcatcacaggagccgagcagaacagagagctgaag
atgtggtgcacggtgtcctggacctgtctgcagactgttcgtttttcccctgacatcttc
agctccatgaatattcctcccagcctgaaagtctgcctggacctctcagctgagtatctg
atactgagtgatgtgcagaggaaagtattgtatgtgatggagttgatgcagaaccaggag
gagggcaaagcttacttcagctccatctcagagttcctcctgacccacccagtgctgagc
tttggcatccaggccgtgagccgctgccggctgcggcacactgaggtgctcccggcagag
gaggagactgacagcttgagtgtagaaggtgctcagggcactggggctgttgaatcagca
gcaggtgtgctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatc
agattccagcctcttcacagccctgacacaagtgcttccatgcctgcccatggctctcat
gaagaatttgcctttccagaccacatggctgatctgggcacggaggggctgggctctgag
aaggagtctgtgcacggctcccagccggacctgcggcgcatcgccgatctgcccgtgcca
gctgacttcctgtccctgtccagtgatgccaagcccaaactgatgactccagatgcattt
atgacaccaagtacttctcttcaacagatcgctgtctctccaggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacagatgcctctctgcccagagct
tcagaagacctgacagtgagccccaagatgcagctggacaccagcctgacgctgagcagc
agcagcagcagtctccagaccagtcccaggagtcactctgttcttatcccaggcctccct
gacaagcttacaccaaaggcacctgttccagtggcaccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgtgagcgctcc
ccagacgtcatttcctctgcttccacagccatgtcccaggatatcccagagattgcttcc
gagacgctgcagcgcagcttcgcggcggcggcgcccgcgctgcccggggaggcgctggag
cccgggcaccacgcggacagcatggcctcagccgcctctgccctgcacctgctgtccccc
aggaaccgccacaactccgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccatcgttactggagactgctttaactcaggaaaatgcatcttct
gacagtgttgtgagtcagccgtggccggcggcccctgacataacccgggaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagttcttcctaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagagcaaagtgac
cacgatgatgaagttgcaagcttggcttctacatcaggtggatttggtgccaaggcatca
gcacagaggctgcctgtgaaggattggaaagtcaaagcatccccccgggcctccccaaag
ctgaagaggaagggcaagaaggatgatggggacatgaaccagtcaccaagatcatctaac
aaccaggtgacagcagagttccaggaggaggtgatgtgcatcctgaggagccagcagcgt
gagctctcggagctgcggcagacgcaggtggagctgctgcagaggctcacggatcacctc
gacgccatccagagctccctcatgggccacatggagagggtcatcgactcccagcacgag
caggagcagaggaggctggagcgggtgctgctggaggggcagcagcgcaatgggcagctc
caggagcagctgtcccagcagctctcacagtctctgtccacggccgtgtgtaaccgcctg
gagaggaccatccgcgaggagatgaagaaaacagtgccccagtgcatttccaagagcatg
gaccctacagtcagccagctcagtaatactattgctaccaagctcactgctgttgagggc
acactgaaagagaatattaccaagctagtgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgatactctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctggaggctcacctgaagaacaag
aaggtgcgtgagcaggaggtgcgggagccgctgctggggcagctgcggcagctgctgagc
gccctgcagagcagcacggagcagctggcctccagcgtcaccgccagcgtgcacgccgag
ctgcagcaccagctccacctcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagagtcattaaaggagaggtgagcctggccatgaaggagcagcaggcggctgtcacc
tccagcattgtccaggccatgcgctcggcagccgggacacccatcccctctactcacatg
gacttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaaccag
gctttccagcaggctctaacagcagctgatctcaacctggttctctatgtctgtgagact
gtggatactcagcaagtatttggacagcatccatgcccactgtcccagcctgtgctgctc
tccctcattcagcagctctcctcagatctgggcactcgtacagaactgaagttgaactac
ttggaggatgcagtgatgcaccttgaccaaagcgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcagaagctcttccagttcctccaggtggaaccccacaac
cctctgagcaagcctgcgcgtcgcctcatgatcatgctgcagggcctggtcacccctggc
atgacctag
DBGET
integrated database retrieval system
