Zonotrichia albicollis (white-throated sparrow): 102072726
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Entry
102072726 CDS
T07911
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Pathway
zab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102072726 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zab03019
]
102072726 (NUP188)
Messenger RNA biogenesis [BR:
zab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102072726 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
DUF948
Motif
Other DBs
NCBI-GeneID:
102072726
NCBI-ProteinID:
XP_026651387
Ensembl:
ENSZALG00000003451
LinkDB
All DBs
Position
Unknown
AA seq
1737 aa
AA seq
DB search
MAAGGLSARSSRELWTILLGRSALREPAQIAAELNKHWQRLLEGLSYYKPPSTTSAEKIK
ADKDVAAPLKELGLRVSKFLGLDEEQSVQLLQSYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERICILRCVLHLLIYFQDERHPYTAQYFQCVEKLDKELVPNYRKQFEALYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPEELLAFAKMFKEQ
GFGTRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERALDDRTEEHKLANNQHI
HQEMDNQLLQLGDVSHHAPVLLAWALLRHTINPDESTNIIRKMGSTAIQLNVFQYLTKLL
RSLSSGGKNCTASTACMCIYGLLSFVLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWK
TEPTAGLGIILDSVCGMFPHLLTPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQAPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPVDVIASCVNCLTVLASRMPAKVWTDLHHTGFLPFVANPLSSMNHMISAEGMNAG
GYGNLLMSMEQPQGEYSVTISFLNLVTTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHRW
RYNSHGVREKIGCLILQLIHAILNLCPEMDPRSSNAPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQSSSDESQGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
HLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPP
PSESSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLKNFSSKKRFAYWSEYVRALA
QHVAETEGSSCASATEYQMLISAWRMLLIISTSHADIMHLTDSAVHQELFLDVLNGTRVL
LQVPMSVPCLQLGSMLCTLLLILLKQWKRELSSVDKIINSLTQILEGVLQADQQMMEKTK
AKVFSALITVLQMKEMKVNDIPQYPQLVLSVCETLQDEVIALLDQTRHSLSVGDAADDKD
SMETDDASRVRHKDQRDGVCVLGLHLAKELCEVDEDGDYWLQITRKVPVLPTIFAALEIS
LRVKQNLHFTEASLHLLLTLARTQQGAAAMAGAGVTQSVCLPLLSVYQLSTNGAIQTSAS
SRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSL
ACLEEADHTVGFILQLSNFTKEWHFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYLQ
TKNGDSLPSSVTPRVQRNPPASSKPPSPESEAAEQKALLTVQYSLLKILSKSLAALRHFT
PDVCQILLDQSLDLAEYNVLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGEMDKKKE
PFPQAAGLNMQEGTKTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgggctgagcgcgaggagcagcagagaattatggacaattctgctgggc
agatcagctttaagagaaccagcccagattgctgcagagttgaacaagcactggcagagg
ctgttagagggactgtcctactacaaaccaccaagtaccacttcagcagaaaaaattaaa
gctgataaagatgttgctgctccactaaaagagttgggtctgagagtcagcaagtttttg
ggtctggatgaagagcagagtgtgcagttgttacaatcttatcttcaagaggattacaga
ggaacaagagactccttgaagacagttcttcaggatgaaaggcagagtcaggctctgatg
ctgaagctcgctgactactactacgaggagaggatctgcatcctgcgctgcgtcctccac
ctgctcatctacttccaggacgagagacacccttacacagcacagtacttccagtgcgtt
gaaaagttggacaaggagctcgttcccaattaccgcaagcagtttgaagcgctctacaaa
gcagaggctcctacatgggaaacacatggaaatctgatgacagaacgtcaggtttcccgg
tggttcgtgcagtgccttcgggagcagtccatgctcctggaagtcatcttcctctactat
gcatactttgaaatggcacctgaggagctgctggcctttgcaaagatgttcaaggagcag
ggatttggcacaagacaaaccaacagacatttagtagatgagagcatggatcacctcgtg
gatcgtattggctactttagtgctcttattctggtggaaggcatggaaattgactccctc
catgagcgtgctttggatgacaggacagaggagcacaagttggccaacaatcagcacatc
caccaggagatggacaatcagctgttgcagttaggggatgtctcacatcatgctccagtg
cttttggcctgggctctgctccgccacaccataaacccagatgagtccacaaacatcatc
aggaagatgggcagcactgctatccagctgaatgtcttccagtatctgacaaaactgctg
agatccctcagcagtgggggcaagaattgtactgccagcacagcctgtatgtgtatttat
ggacttctttcctttgtcctgacatcactggaattgcatacattgggcaatcagcaggat
ataattgatgctgcatgtgaagttctggcagcttccagcattcctcagctcttctggaag
acggaacctactgcaggtctgggtattatcctggacagtgtttgtgggatgttcccccat
cttctcactcctctccttcagctgctccaagcccttgtgtctgataaatctactgcaaaa
aaggtatacagtttcctggataaaatgtccttctatattgaactgtacaagcacaaacct
ccagatgtgatctcccatgaggacggcacgctgtggcggagacaggctccaaagctcctc
tatcctcttggactaggtcagacaaacctacggatacctcagggaacagtgggccaggtg
atgctggatgatcgggcttatctggtacgctgggagtattcctacagcagctggactctg
ttcacctgtgagattgagatgctgctccatgttgtgtcaacagcagatgtgattcagcat
tgccagagggtcaagcccataattgatctggttcataaagtcatcagcactgatgtatca
atagcagattgtcttctgccaatcacatcacgaatctacatgctcctgcagaggctaaca
actgtaatctctccccctgtggatgttattgcttcttgtgtcaattgcttgacagtcctg
gcttctcggatgccagccaaggtttggactgaccttcaccacacagggttcttgccattt
gttgccaatccactgtccagtatgaatcacatgatcagtgcagagggaatgaatgctggg
ggctatggaaaccttttgatgagcatggagcagccccagggcgagtacagtgttaccatc
tccttcctgaacctggtaacaactcttgtccggggacaacttggtagcacccagagccaa
ggcctggtgccctgcattgtgtttgttctgaaggaaatgttaccaaattaccacagatgg
agatacaactctcatggagtgagagagaaaatcgggtgcctaattctgcagctgatccat
gcgattctgaacttatgtcctgaaatggatcctcgcagcagcaatgcccccagcctgcag
tccttgtgcatcttcagcctggccaacacagaggcagggcaagctgtcattaacatcatg
ggcattggggtggacaccattgacatggtcatggcctcccagtccagcagtgatgagtcc
caaggccaagggcagctgctgatccagacagtgaagttggcattctccgttaccaacaac
gtcatccggctgaagcccccgtccagcgtggtgtcacccctggagcaggcactcactcag
catggtgctcatgggaacaaccttattgctgtcttggccaaatacatctaccacaagcat
gaccctgcacttccacgcctggccatccagctgctcaaacgactggctacagttgctccc
atgtctgtgtacgcctgcctgggcagtgacgctgccgccatccgcgacgccttcctcacc
cacctgcagagcaagatcgaggacatgcgcatcaaggtcatgatcctggagttcctcaca
gtggcagtggagacacagcctggcctcattgagctgttcctcaacttggaagtgaaggat
ggcagtgatgggtcaaaggaattcagcctgggggagtggagctgcctccaagtggtgttg
gagctgattgactccaagcagcaggagaggtactggtgccctcccctcctgcaccgcgcc
gccatcgccttcctgcacgcgctgtggcaggaccgtcgtgacagcgccatgctcgtgctg
aggacaaaaccaaagttctgggaaaatttaactaatcccctctttgggacccttcctccg
ccttctgaatcatcagagctcagtgtcttggatacctgtgccttaataatgaaaatcatc
tgcttggagatctactatgttgtcaagggctcactggaccagtccctgaaggacactctg
aagaatttctccagcaagaagcgctttgcctactggtcagagtacgtgagggccctggcc
cagcacgtggcagagaccgagggcagcagctgcgcctccgccaccgagtaccagatgctc
atctcagcctggaggatgctgctcatcatctccacaagccatgctgatatcatgcatctg
actgattctgcagttcatcaggagttgtttctggatgtgctgaatggcaccagggttttg
ctccaggttcccatgtcagtgccctgtctgcagctggggtctatgctgtgcacccttctt
ctgatcctgctcaagcagtggaaacgcgagttgagttctgtggataaaatcataaactcc
ttgacgcagattctggagggagtactacaggcagatcagcagatgatggagaaaaccaaa
gccaaagtgttctcagctcttatcactgttctgcaaatgaaggagatgaaagtgaatgac
atcccccagtacccccagctggtgctgagtgtgtgtgagactctgcaggacgaggtcatc
gctctcttggaccagacccggcacagcctgagcgtgggcgatgctgcagatgacaaggac
agcatggagacggacgacgcgtcccgcgtgaggcacaaggaccagcgggatggggtgtgt
gttctgggtttgcacctggctaaggagctctgtgaagtggatgaagatggagattactgg
ctgcagattactaggaaagtccctgtgcttcctaccatctttgctgcactggagatcagc
ctgagagttaaacaaaaccttcacttcacagaggcctcgttacatctgctgctgacccta
gcaaggactcagcagggagcagcagcaatggctggagctggtgtcacccagagcgtctgc
ctgcccctcctgagcgtgtaccagctcagcaccaatggagccatccagacctctgcctca
tcccggaaatccctggatgcgccctcctggcccggggtctatcggctctccatgtccctc
atggaacgtctgctcaaaacactcagatacaacttcctgacagaagctctggactttgtg
ggtgtccatcaggagaggatccttcagtgcctgaatgcagtacggactgtgcagagcttg
gcctgtctggaagaggctgatcacactgtcggcttcattcttcagctctcaaatttcaca
aaggagtggcatttccacctgccacagcttatgagggacatgcaggtgaatctgtgttac
ctgtgccaggcctgtacctccctcctgcacagccgtaaaatgctccagcactacctgcag
acaaagaacggcgactccctcccctccagcgtgacgccccgcgtgcagcgcaaccccccg
gcctcctccaagccccccagccccgagtcagaggcagcagagcagaaggccctgctcaca
gtgcagtacagcctcctcaaaatcctcagcaagtccctggctgccctgcgccacttcacc
cctgatgtctgccagatcctccttgaccagtctctggaccttgctgagtacaacgtgctc
tttgtcttgagtttcaccacaccagcctttgactcggacgttgcaccttcctttgggacc
ctccttgccacagtcaacgtggccctgaacatgctgggagagatggataagaagaaagaa
cctttccctcaggctgcagggctgaatatgcaagagggaaccaaaaccctcaagtctctg
ctgatgtttacaatggagaactgtttctacctgctgatctcgcaggccgtgcggtacctg
cgggacccggccgtgcacccgcgggacaagcagcgcatgaagcaggagctcagctcggag
ctgagtacgctgctctccagcctgtcccggtacttccgcaggggagggccctcttcccct
gccagcggggtccttccctctcctcagggcaagtctgcctccaagctgggtccagagggg
caggagcccttgttccagctggtgcaggcctttgtccggcacgtgcagagatag
DBGET
integrated database retrieval system
