Zonotrichia albicollis (white-throated sparrow): 102073197
Help
Entry
102073197 CDS
T07911
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zab03019
]
102073197 (FOCAD)
Messenger RNA biogenesis [BR:
zab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102073197 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
102073197
NCBI-ProteinID:
XP_005490991
Ensembl:
ENSZALG00000013538
LinkDB
All DBs
Position
Unknown
AA seq
1808 aa
AA seq
DB search
MLDDIKKRFEFPNAVVQSQAVGHLIAAVLKEKVSSKKIRQASDQTPALNLLWEKCCSENV
ALRTACCEGLVALVVEKHAELDYVLHGALNLIPSARNVHGLVKTICKLIQIQAVQLGKDG
DESVWSLYGIRSTPHPLITVLENRPDCWPVLLQQITAFFHQCPERAEGSCVGIMASFLRY
LYCEPSQLREYAELRMGLLKILVQPHGPKHKEAPSILECEILRLLCDLIPHLQLKDLLQV
TEALFFLQELFLSLLRYPSFWEVQLTQLSLQLLCFCEVCLNVTGECSSLISLIEDNFELL
KEVFPVDQYIVGLALLLLQTPESQQKSVLSLAYKLLSCSETQDISTTALTLVMPVLQILS
STTVGDCISGDVSGATRQQLAVKLLGILKEEGVKDKQELVPCKLLCPITSSYSSLYTTWK
IMELMKEKSAVTKWLSSVKSLLPFSTQIPAHVFLLLAYLLIQENGDSLHSVLQATTEIAK
ADCSQVPNLIPVLIFKLGRPLEPALYREILYTLPTLGVHKVCVAQILRAIHMLGSTAKLR
AIASRLMTSLWERQDRIYPELQKFLAMSDMSSVSVDKDAQWEKLIAKAACVRDICRLRPY
QHGADMLAAISQVLNECTKPDQASPAAIVLQGLRALCEAEVVCIRSTWNALSPKLSCDTR
PLILKALNELFSLVPSLTVNTNEFEKFKAQVLSFLWNNTQNEDALVAISAYKSLSSFDSE
EHTIFHLPGQARPEVDSLEVIDMNEDEEDQEANLFVPGSSYIKLLSLTPAAVLGAFEEFA
TSLVKQEMTNMPRAVYHSALRGGTTRSDQGKTVAGVPNFLLKMYERNKQPGMTPGLAAGM
LLCFDLPVHMGKDGKPINRFLASRGRNFQQMLVALIHEVNIQPSEWHHSILLPQTWLGFM
SRTYSAVLQGRQAELEMQLKHGKEDPEEVQYKQFTAWLWVRDMLTDVIKGASKDSPVVKG
NSIFALTGLAVAVAKYESSLSSDTEGVPETEPDFIPMKQWISMVTETLLSIVNSRYQPKG
QVFPWFYQKSYSGENTASIIARTCAATALSLLVPIFIVSCKEKIEEVLSMLTDRLPGKPN
ADESQAVQIHMGLGLGMFISRLYEEKVSDLPGQQMNFVLMKSLDVLENCCFDTSLEYNTG
CILGVGLVLSFMSHSSQTESRVHVSASLRKLYKYLDSSEDQSRGVQEVLAYSVACSCVSA
FSVGIIEAAEAEKAMSKLRTLAENNQQTYSFALALGAIVHGLSACGHGKAEDLSNRLMPA
WIKIVLAEGSPTMERLAAVSGLVALVGSEGGMIQLKSESIQSSQFQSKLNEVIRTLTQII
SFSEQIGLQTNAARLLGRLHMSCLSSTQNRASVPPDFGYLPVNSFIRAAIDFAIEGGKKG
PESVPAELVKVALAPIALVGESHQYPPVNWASILSPLMRLDFGDEVKHLCLELAVTQAQS
SQNAAMLLGMWVAPPLIYSLSMKTQKYLFMSLSLWMQHVAEDKLQSFTEVFLIQQFEVQN
RTKNPEICQCVLQGLIQAMKLPSPAQFCWSFLCQAVEKIYELLPNEVQRGELEMYINVAR
CISEMADSEINRIVQISKNNIEKATFVKVYLVSQGRLSLTNLSAVIHIVAGYHQKKNILW
MFLHSFYHARIVRHENTGVLKRMDWLLDLMGYIRNVACKSTPLQNGDLKEVDLKECIDFL
MWLFAASVLAWADHGAPLLLGLSADWSLWKHHMVSPELYEEHIGKHPTDKFAVQETLTLL
PSSLSLLLAKEPWKEQTQKFIEWLINMMECPREALSKSTMDLLKVTLLALRSLAEFKKKA
IWTKACGW
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgctggatgacatcaagaagcgatttgaatttcctaatgcagttgttcagtcacaggca
gtgggccatctgattgctgcagtactgaaagaaaaagtttcttcaaagaagatcagacag
gcttctgaccagactcctgctctgaacctgctttgggagaagtgctgcagtgagaatgtt
gccttgcgaacagcctgctgtgagggcttggtggcacttgtggtggagaaacatgctgag
cttgactatgttcttcatggagctctcaacctaattccctcagcaaggaatgtgcacggt
ttagtaaaaactatttgcaagttaatacaaattcaagctgttcagctcggaaaagatgga
gatgagtctgtctggagtctgtatggaatcaggagcactcctcatccattaatcactgtc
ctagaaaacagacctgattgctggccagttctactacagcagataactgcatttttccat
cagtgtccagaaagggcagagggttcatgtgttggcataatggcttcatttctgagatac
ctctattgtgaaccatcccagttacgggaatatgctgaactgcgaatgggtttacttaag
atcttagtgcaacctcatgggccaaagcacaaagaagcaccctccatactggaatgtgag
attcttcgacttctgtgtgatttgattccacacttgcagcttaaagacttactgcaagtt
acagaagccttgtttttcctgcaagagctgttcctcagcctactacgctatccttcgttt
tgggaagttcagttaacgcagcttagtctgcagctgttatgcttctgtgaagtgtgttta
aatgtgacaggagaatgctcatctttaatctccctaatagaggacaactttgagctccta
aaagaggtatttccagtggaccagtatatagttgggctagcacttctccttctgcaaact
ccagaaagtcagcaaaagtcagtcttgagtctagcctataagctgctttcgtgttcagaa
acccaggacatctcaaccacagcccttactttggtgatgcctgtgctacagatcttatct
tctacaacagttggagattgcatatcaggggatgtttctggagctaccaggcagcagcta
gctgtcaaactgttgggaatattaaaggaggaaggtgtgaaggataaacaggaattggtg
ccctgcaaactcctatgccccataaccagctcttacagttcattgtatacaacctggaag
atcatggagctcatgaaagagaagtctgcagttactaagtggctatcttcagtgaagtca
ctactaccttttagcactcaaatacctgcccatgtttttcttttgttggcttatctattg
atccaagaaaatggagacagtcttcacagtgtactccaggctacaacagaaatagccaag
gctgattgttctcaggtcccaaatctgatccctgttctgatatttaaattgggaagacct
ttggagcctgcactttacagggagatattgtatactttgcctacacttggtgtacataag
gtttgtgtagctcagattctacgtgccatacacatgctggggagcacagctaagctcaga
gcaattgcctcacggctgatgacatcattatgggaaagacaggatcgaatttatccagaa
ctgcagaagttcttggcaatgtctgatatgtcctctgtatctgttgacaaagatgcgcaa
tgggaaaagctgattgctaaagctgcttgtgtaagagatatatgtaggctgagaccatac
cagcatggagcagacatgttggctgcaatttcccaggtattaaatgaatgcacaaaacct
gatcaagcttcacccgctgccatagtattacagggtctacgggcgctttgtgaggctgag
gttgtttgcatccgttctacatggaatgctctgtcaccaaagctgagttgtgataccaga
ccactcattttaaaagcactgaatgaattgttttccctggttccctcattaacagtgaat
acaaatgaatttgagaaattcaaagctcaagttctcagcttcctttggaacaatacacag
aatgaggatgcccttgtagccatttcagcctataaatcactctcatcatttgactctgaa
gagcatacaatttttcatcttcctggacaggcacgaccagaggttgactcactggaagtg
atagacatgaatgaagatgaagaggatcaggaggcaaatctgtttgttccgggttcttca
tatatcaagctgttgtctctaacaccagctgctgttttaggagcatttgaagagtttgca
acatcacttgtgaaacaggagatgaccaacatgccacgtgctgtctatcattctgcatta
agaggagggacaacacgctcagaccaggggaagacagtggcaggtgttccaaatttcttg
ctgaaaatgtatgagaggaacaagcaaccaggcatgacaccaggccttgcagctggcatg
ttgctgtgtttcgatctcccagtccacatgggcaaggatggcaagcctattaatcgattt
ctggccagcaggggccgcaatttccagcaaatgttggttgccctcattcatgaggttaat
attcagccttctgaatggcaccactccatattgctgccacagacctggttaggatttatg
agtcgaacctacagtgcagtcctgcaggggaggcaggcagagctggagatgcagttaaaa
catggaaaagaggatcctgaagaggtgcagtacaaacaatttacagcctggctgtgggtc
agagatatgttgaccgatgtcatcaaaggtgcttccaaagacagcccagtggtgaaagga
aactctatttttgctttaactggccttgcagttgctgtagccaaatacgaaagcagcctt
tcttcagacactgaaggggtacctgagacggaacctgattttattcctatgaaacaatgg
atttccatggtcacggagaccctcttgagtattgtgaatagccgctaccagccgaaaggt
caggtcttcccatggttctaccagaaatcttactcaggtgaaaatactgctagtattata
gctcgaacctgtgcagccacagctttgtctctcctggtgccaattttcattgtatcatgc
aaggaaaagattgaggaggtcctgagtatgctgactgacaggttacctgggaagccaaat
gctgatgagtctcaagctgttcaaatccacatgggtcttggtttggggatgttcatctca
cgtttatatgaagaaaaagtcagtgatttacctggtcaacagatgaacttcgttttgatg
aaatccctggatgtgttggagaactgttgctttgacaccagtctggagtacaacactgga
tgtattttaggagtaggacttgttctttcatttatgagtcacagtagccaaacagaatca
cgagtgcatgtttctgcttcattgcgaaaactctacaaatacctggacagcagtgaggac
caaagcagaggagtccaagaggtacttgcctattctgtggcctgttcctgtgtctctgct
ttcagtgttggaatcatagaagcagctgaggctgagaaggctatgagcaagctacggacc
ttagcagaaaataatcagcagacgtacagctttgctttagctttaggtgcaatagtacat
ggattgtcagcttgtggtcatgggaaagctgaagatctgagtaacagactaatgccagcc
tggataaaaattgtgcttgcagagggttctccaacaatggaacgtctggctgctgtcagt
gggctggttgcactggtgggctctgaaggaggcatgatacagctgaaatctgagagcatt
cagtcctcacagtttcaaagtaagctgaatgaagtgatcagaacccttacacagataatt
agtttctctgagcagattggtcttcagacaaatgcagcaagacttctgggacgtcttcac
atgtcctgtttgtcttctacccagaacagggcatctgttcctccagattttggctactta
cctgtaaacagctttatcagggcagccattgactttgctattgaaggtggaaagaaaggc
cctgaatctgtcccagctgaactggtgaaagtagcactggcacccattgcattagttgga
gaaagccatcagtatccacctgtaaactgggcatctattctttctcctttgatgaggctg
gactttggtgatgaggtaaaacatctctgccttgaactggctgtgacacaggcccagtca
tctcaaaatgcagcaatgcttttagggatgtgggtggcacctccccttatctacagtctc
agtatgaaaactcagaaatatcttttcatgtccctgtccctgtggatgcaacatgttgca
gaagacaaactacagtcttttacagaagtgtttctgatacaacaatttgaagtgcagaac
cgcacaaaaaacccagaaatttgccagtgtgttctacaggggctcatccaggcaatgaaa
cttcccagccctgcccagttttgctggagctttttgtgtcaggctgtggagaagatatat
gagcttcttccaaatgaggttcagagaggtgaactggagatgtatatcaacgtagcaaga
tgtatttcagaaatggctgattcagagatcaatcgcattgtccagatctccaagaacaat
atcgagaaggccacgtttgtgaaagtgtatttagtttctcaaggcagattgtctctgacg
aacttgagtgccgtgattcatattgtggcaggatatcatcagaagaaaaatattttatgg
atgttcttgcatagtttctatcatgctcgcattgtgagacatgaaaatacaggagttctg
aaaagaatggactggctgttagacctgatgggctacatcagaaatgtagcgtgcaagtca
acacccttacaaaatggtgatctgaaagaggttgatctgaaagagtgcatagatttcctc
atgtggctgtttgcagcttctgttttggcctgggctgaccatggtgcaccattactgctt
ggcctcagtgctgactggtcactgtggaaacaccacatggtatcaccagaattatatgag
gaacacattggcaagcaccccactgacaagtttgctgtgcaagagactctcactctcctt
ccaagtagcctttcccttttgctggctaaagaaccatggaaagaacaaacacagaagttt
attgaatggctgatcaatatgatggaatgtcctagggaagcattatcaaaatctaccatg
gatctgctgaaagttacacttctggccttgagatctcttgcagagttcaagaaaaaagca
atatggactaaagcttgtgggtggtag
DBGET
integrated database retrieval system
