Zonotrichia albicollis (white-throated sparrow): 102073764
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Entry
102073764 CDS
T07911
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
zab
Zonotrichia albicollis (white-throated sparrow)
Brite
KEGG Orthology (KO) [BR:
zab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zab03016
]
102073764 (RTCB)
Enzymes [BR:
zab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102073764 (RTCB)
Transfer RNA biogenesis [BR:
zab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102073764 (RTCB)
Prokaryotic type
tRNA splicing ligases
102073764 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
102073764
NCBI-ProteinID:
XP_014125473
Ensembl:
ENSZALG00000003209
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMS
DPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNA
KDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAG
NHYAEIQVVDEIYNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDK
IIVNDRQLACARIASAEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDM
HVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTM
GTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPK
LVMEEAPESYKNVTDVVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaggagctgcgcaatgcctgccgcggcggaggtgcaggtggcttcctgcctgct
atgaaacagattgggaatgtggctgcattgcctggcattgttcacagatcaataggcctt
ccagatgtccattctggctatggatttgctattggcaacatggctgcctttgatatgagt
gatcctgaagcagtggtttcaccaggtggtgtcggctttgacatcaactgtggcgtccgc
ttgctgcggacaaatttggacgaaagcgatgtgcagcctgtgaaagaacagctcgcccag
gctatgtttgaccacattcctgttggtgttggctccaaaggtgtcatccccatgaatgcc
aaggatttggaagaggcgctggagatgggtgtggactggtctctccgagagggctatgcc
tgggcagaggacaaggagcactgtgaggaatatggaagaatgctacaggccgaccccaac
aaagtctcttcaagggcaaagaaaaggggcctgcctcagctggggaccctgggagctgga
aatcattacgctgaaatccaggtggtggatgagatttacaacgaatacgctgccaagaaa
atgggcattgaccacaaagggcaggtgtgcgtgatgatccacagtggaagcagagggctg
ggccaccaggttgccacagatgcactggtggctatggaaaaagctatgaaacgggacaaa
atcatagtgaatgatcggcagctggcgtgtgccaggattgcctctgcagagggacaggat
tacctgaagggaatggcagctgctggcaactatgcctgggttaaccgctcttccatgact
ttcctaacacgacaggcttttgccaaagtgttcaacacaaccccagatgaccttgacatg
cacgttatctatgatgtgtctcacaacattgccaaggtggaacagcatgtggtggatgga
aaggagcggactctgctggtgcacagaaagggatcaaccagggccttcccccctcaccat
cctcttattgctgttgattatcaactgactggacagcctgttttgatcggtggcacaatg
ggcacctgcagctatgtcctcactggcacagagcaaggcatgactgagacctttggaact
acttgccatggagctggtcgtgcactgtctcgagccaaatctcgacgtaacttggacttc
caggacgtactggacaagctggctgacatgggcattgccatccgtgttgcttctcccaaa
ctggtcatggaagaagcaccagagtcttacaagaacgtgactgatgtggttaacacctgc
catgaagctggcatcagcaagaaagccattaaactgagacctattgctgttataaaaggc
tag
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integrated database retrieval system
