Zhongshania aliphaticivorans: AZF00_11335
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Entry
AZF00_11335 CDS
T04315
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
zal
Zhongshania aliphaticivorans
Pathway
zal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZF00_11335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zal03019
]
AZF00_11335
03400 DNA repair and recombination proteins [BR:
zal03400
]
AZF00_11335
Enzymes [BR:
zal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AZF00_11335
Messenger RNA biogenesis [BR:
zal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZF00_11335
DNA repair and recombination proteins [BR:
zal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AZF00_11335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
SAM_GIDA_C
Motif
Other DBs
NCBI-ProteinID:
AMO68856
UniProt:
A0A127M6J7
LinkDB
All DBs
Position
2553073..2555220
Genome browser
AA seq
715 aa
AA seq
DB search
MNTANHADISPSISSALQVLQSVYGYESFRNQQADIVDHVIQGGDALVLMPTGGGKSLCF
QVPALVREGTAIVISPLIALMQDQVMALRQNGIKAAFLNSSLNGMEVNEVENQLMNGELE
LLYIAPERLMMPRMLQLLDNAPLSLFAIDEAHCVSQWGHDFRPEYIKLTILHERFPNTPR
VALTATADGPTQREIIERLSLHNARVFNDGFDRPNIRYRITENQGTARENLLRFILNEHE
GEAGIVYCLSRKKVDEIALWLSGKGMTALPYHAGMSNEQRQQHQERFLREDGVIIVATIA
FGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGQPADAWMAYGLQDVITLRQMQGNS
GAEESRKRLEQHKLDAMLGLCELTTCRRQALLRYFDDDYDHACGNCDNCLTPPETWDATV
AAQKALSCVYRTGQRFGVSYLVDVLLGKENERISQFGHDKISTFGIGGELNNTEWRTLYR
QIIARGLLRVDVEGHGSVQLTDTARPILKGESQLTLRKMVKISKSERRKAKAYTGTGNAV
LWEALREHRKILASEQEIPAYMIFHDATLAEMAERQPQTLDQLSRVSGVGESKLAKYGAG
FLQVILANLNAPTAEDINDTAATSIAMLKRGKDPETIAGERSLALTTIYGHLCQGIASGE
LNIGDVVTLSDAQLKEIQFAFEHSEDGKIKPVYELLDGEYDYNILKCVKATLHAL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagctaatcacgccgatatcagccccagtataagtagcgcgctgcaggtcctg
caaagtgtttacggttatgagtcttttcgcaatcaacaggccgatattgtcgaccacgtg
attcaaggtggcgacgccttggtgctgatgcccaccggtggtggtaagtctctgtgtttc
caagtgcccgcgctggtgcgcgaaggcaccgccattgtcatttcgcccttaatcgccctg
atgcaagatcaggttatggcgctgcgccaaaatggtatcaaagcggcctttttgaactct
agcctcaacggtatggaagtgaatgaggtcgaaaatcagctgatgaacggcgagctagag
ctactctatatagccccagaacgactgatgatgccccgcatgttacagctcctggacaat
gcaccgctatccctgttcgctattgacgaagcccactgcgtatcccagtggggccatgat
ttccgccccgaatacatcaagctgaccatactccacgagcgttttcccaatacaccacgt
gttgcgctaacggccaccgccgacggccctacccagcgcgaaatcatcgagcgcttgtca
ctgcacaatgcccgcgtctttaacgacggcttcgaccgccccaatattcgctaccgcatt
actgaaaatcagggcaccgcgcgggagaatttactgcgtttcatactcaatgaacacgaa
ggcgaagcgggaatcgtctactgcctgtcgcgtaaaaaagtcgacgaaatcgcactttgg
ctcagtggtaaaggcatgaccgccctgccctaccacgctggcatgagcaatgagcagcgc
caacaacatcaggagcgctttctccgcgaagacggcgtgattatcgttgccaccattgcc
ttcggcatgggcatagacaaacccgatgtccgctttgttgcccatctcaatctgcccaaa
agtatagaggcctattaccaggaaaccggccgcgccggtcgtgacggtcagcccgccgat
gcgtggatggcctacggcctccaagacgtgattaccctacgccaaatgcagggcaattcc
ggcgccgaagaaagccgcaaacgacttgagcaacacaaactcgacgccatgcttggcctc
tgtgaacttaccacctgccgtcgccaagcgctgctgcgctattttgacgacgactacgac
cacgcctgtggcaactgcgataactgcctcacgccccccgaaacctgggacgcaaccgtt
gccgcccaaaaagccctgtcctgtgtttatcgcaccggtcagcgcttcggggtcagctac
ttagtcgacgtgttattaggtaaagaaaacgaacgtatcagccagtttggccacgataaa
atttcgaccttcggcatcggcggcgaactcaataacaccgagtggcgcacgctgtaccgg
caaattattgcccgaggcttattacgagtggacgttgaggggcacggcagcgttcagctc
accgataccgcaagaccaattctgaaaggcgaaagccaattaaccctgcgtaaaatggtt
aaaatcagcaagagcgaacgtcgcaaagccaaggcttacaccggcacgggaaatgcggtg
ctatgggaagccctgcgcgaacaccgcaagatactagccagcgagcaagagattccagct
tatatgatttttcatgacgccacccttgccgaaatggccgagcgccaaccccagaccctc
gaccagttgagccgcgtgtccggggttggcgagagtaagctcgccaagtacggcgcgggc
tttcttcaggtcattctcgccaacttgaatgcgccaaccgccgaggacatcaacgacacc
gccgccactagcatcgccatgctcaagcgcggcaaagacccagagacgattgccggagaa
cgcagcctcgccctcaccactatttatggtcacctctgccaaggtattgccagcggtgaa
ctcaatatcggcgatgtggtcacattaagcgatgcacagctcaaagaaatccaatttgcc
tttgaacacagtgaagacggcaaaataaagccggtctatgaactattggacggcgagtac
gactacaacatacttaaatgcgttaaggccaccctacacgcgctatga
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