Zhongshania aliphaticivorans: AZF00_13245
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Entry
AZF00_13245 CDS
T04315
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
zal
Zhongshania aliphaticivorans
Pathway
zal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZF00_13245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zal03019
]
AZF00_13245
03009 Ribosome biogenesis [BR:
zal03009
]
AZF00_13245
Enzymes [BR:
zal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZF00_13245
Messenger RNA biogenesis [BR:
zal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZF00_13245
Ribosome biogenesis [BR:
zal03009
]
Prokaryotic type
rRNA helicases
AZF00_13245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Flavi_DEAD
UvrA_inter
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMO70371
UniProt:
A0A127MAU5
LinkDB
All DBs
Position
complement(2991785..2993617)
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AA seq
610 aa
AA seq
DB search
MPSDTPAAADTITFDDLGLAPLILAAVKAVGYEIPSPIQAATIPLILAGRDVVGQAQTGT
GKTAAFALPLLSRLDVNSRRTQALILAPTRELAIQVAEALQSYASQLPGFNVLPIYGGQD
YRGQLAALKRGVQVVVGTPGRVMDHMRRGTLKLDDLTHLVLDEADEMLRMGFIDDVEWVM
SQMPAKRQIALFSATMPSAIRRIATTYLTNPEQVTIQTKTSTAITIRQRYWMARGLNKLD
ALTRILEAEPFDGMIIFVRTKLVTTELAEKLQARGYAAAALNGDIAQAQRERTVEQLKNG
RLDIVIATDVAARGLDVERISHVINYDIPHDTEAYVHRIGRTGRAGRSGDAILFVAPREK
RMLQAIERATRQSIEEMGLPSAENINALRVDRFMQKITDTLAGTDLSFFRKMLQEYVAKH
DVSEIDVAAALASQLQGDKPLLVKDAPKMMTDRPQSRDKPGGISRGPDTGMQRYRIEVGR
QHGVSAGNIVGAIANEANIDSANIGRISIYPEFTTVDLPKEMPDDVVQCLRTTRVAGQPL
NISVHEGGDMPIDDRERPRKPRGKPSGDKAGRKPVKAKPRVSNAAAKPANAKPSSAKPTL
TGTREKRGKV
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagatacacccgcggcagcggatacaattacttttgatgatttaggccttgcg
ccccttattttggctgcagtaaaggcagttggttacgaaattccctcgccaattcaggcg
gcgacaatcccccttattcttgccggcagagatgttgtcggtcaggcgcaaactggcacg
ggtaaaaccgccgcatttgccctgcctttgctgtcgcgtcttgatgtgaacagccgtcgt
acccaggcgttgatattggcaccgacccgcgagctagccattcaggtggcagaagcactg
caaagctacgcgtcgcaattgcccggcttcaatgtactgcctatctacggcggtcaggat
taccgaggtcagctggcggcgctaaaacgcggcgtacaagtggttgttggtacgcctggc
cgggtaatggaccatatgcgtcgcggcaccttgaaattggatgatttgacgcatctggtt
ctcgacgaagccgacgaaatgctgcgcatgggctttatcgacgatgttgaatgggttatg
tcgcaaatgcctgctaagcgccaaatcgccctgttttcggcaaccatgccgtcggcgatt
cgccgtattgcaacaacgtatttgactaatcctgagcaggttactattcagacgaaaacc
tcgacggcgattactattcgccagcgctattggatggcgcggggcctgaataaactggat
gcattgacccgtattctggaagccgaaccgtttgacggcatgattatctttgtgcgaacc
aaattggttaccactgagttggctgaaaagcttcaggctcgtggctacgccgcggctgcc
ttgaacggcgatattgctcaggcccagcgtgagcgcacggtagagcagcttaaaaatggc
cgcttggacattgttattgcgactgatgtggcggctcgtggccttgacgttgagcgtatt
agccacgttattaactacgatattccccatgacactgaggcttatgtgcaccgtattggt
cgtactggccgcgcgggtcgtagcggtgatgcaattttatttgtggcaccgcgcgaaaaa
cgtatgctgcaagccattgagcgcgccacccgccagtctattgaagaaatgggcttgccc
agtgctgagaatatcaatgccctgcgtgttgatcgctttatgcagaagatcaccgatacc
cttgccggtaccgatttgagctttttccgtaaaatgctgcaggaatacgttgccaagcat
gatgtgtctgaaattgacgttgccgctgcgctcgctagccagttgcaaggtgataagcct
ttactggtaaaagacgcgccgaaaatgatgacagatcgtccgcaaagccgtgacaagccc
ggcggcatctcgcgcgggccagatactggcatgcagcgctaccgcattgaagtcggtcgt
cagcacggtgtgagtgccggtaatattgttggcgccatcgctaacgaagccaatatcgac
agtgcgaacatcggccgtatctcgatttaccctgagttcactacggtagatcttccgaaa
gaaatgcctgatgacgtggtgcagtgtttacgtactactcgggtcgcaggtcaaccgctg
aatatctccgtgcacgaaggcggtgatatgcctattgacgaccgtgagcgcccgcgcaag
ccgcgtggtaagcccagcggtgacaaggcggggcgcaagccggttaaagccaagcccaga
gtgtcaaatgcggcggcaaaaccagcaaatgcaaagccaagctcagctaaaccaacgctg
accggcactagagaaaagcgcggcaaggtttaa
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