Zhongshania aliphaticivorans: AZF00_14855
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Entry
AZF00_14855 CDS
T04315
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
zal
Zhongshania aliphaticivorans
Pathway
zal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZF00_14855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zal03019
]
AZF00_14855
Enzymes [BR:
zal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZF00_14855
Messenger RNA biogenesis [BR:
zal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZF00_14855
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AMO69504
UniProt:
A0A127M8C6
LinkDB
All DBs
Position
complement(3348037..3349380)
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AA seq
447 aa
AA seq
DB search
MLKKLFGSGKVSSTPEQATVADSQGAAAVSASKRSPRGRSGAEKQKPAEPEWTLDQFSVP
TEEGKTRFHDLGLDLRLMHGIADTGFKYCSPIQAVSLPHTLRGNDVIGKAQTGTGKTAAF
LITIFNDLLNNPIEEERFAGEPRALVIAPTRELVVQIGEDARALGKYCGLNVVTLIGGMD
YQKQQDKLKGMVDIVVATPGRLLDFEGRKDLYLDQIEILVIDEADRMLDMGFIPQVKRIV
RATPSTNHRQTLLFSATFTDDIMRLTEQWTKEPVKIEIEPESVATDTVDQKVYLVESQDK
YRLLLNIVREEHATSVIIFVNRRDETRRLFEKMQKAGIRCGILSGEIPQNKRSRTLQQFK
DGEIDCLVATDVAGRGIHVNGVSHVINYVLPEDAEDYVHRIGRTGRAGATGTSISFACED
DAFLLPNIEEALGMKLPCVRPPEHLLR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaaaagttatttggctcaggtaaagtatcgtcaacgccagaacaggctactgtt
gcagacagtcagggcgcggcggctgtttccgcaagcaagcgctcgccacgaggtcgcagc
ggagccgaaaagcaaaagccagccgagccggagtggacgctagatcaattctcggtgccg
accgaggagggcaaaacgcgtttccatgacttgggcctcgatctacgtttaatgcacggc
attgccgataccggctttaagtactgctcccccattcaggctgtgtctttgccccacacc
ctgcgcggcaatgatgtgattggtaaagcccaaacgggcaccggcaaaaccgctgcgttt
ttgattactatttttaatgatctgctgaataaccccatagaagaagagcgttttgccggt
gagccgcgcgccttggttattgccccaactcgtgaattagtggtgcaaattggtgaagac
gcgcgagctctcggtaagtactgcggtttaaacgtagtgaccctgattggcggtatggat
taccagaaacagcaggataaattaaagggtatggtcgatattgtggtggcaacgcccggt
cgcctgctcgactttgaaggccgtaaagatctgtatctggaccaaattgaaattttggtg
atagacgaagccgaccgtatgttagacatgggctttattccccaggttaaacggatagtg
cgggccacgcccagtaccaatcatcgccaaaccttattgttcagcgccacctttaccgac
gatattatgcggctcactgaacagtggaccaaagagccggttaaaattgaaattgaaccc
gagagcgtggcgacggacacggttgaccaaaaagtgtatttggttgagtcccaagataaa
tatcgcttactcctgaatatcgtgcgggaagagcacgcaaccagcgtgattatctttgtg
aatcgccgagatgaaacccgccgtttatttgagaaaatgcaaaaggcaggcattcgctgc
gggatcctgtctggcgaaattccccaaaacaaacgctcgcggaccttacagcaatttaaa
gacggtgaaattgactgtttggtggccaccgacgtcgcgggccgaggcattcacgtcaac
ggcgttagccacgtaattaactatgtattgcccgaggatgccgaggattacgtgcatcgc
atcggccgcacgggtcgggctggcgcaacgggcacctcaattagcttcgcctgtgaagac
gatgctttcttgctgcccaatattgaagaagccttgggtatgaagctgccgtgtgttcgg
ccccccgagcacttgcttaggtag
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