Zalophus californianus (California sea lion): 113909445
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Entry
113909445 CDS
T07874
Symbol
VPS39
Name
(RefSeq) LOW QUALITY PROTEIN: vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04140
Autophagy - animal
zca04142
Lysosome biogenesis
zca04145
Phagocytosis
zca04148
Efferocytosis
zca05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
113909445 (VPS39)
04142 Lysosome biogenesis
113909445 (VPS39)
04140 Autophagy - animal
113909445 (VPS39)
04148 Efferocytosis
113909445 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
113909445 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zca04131
]
113909445 (VPS39)
Membrane trafficking [BR:
zca04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
113909445 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
DUF4145
Beta-prop_WDR36-Utp21_1st
Lgl_C
SAM_CEP-1_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
113909445
NCBI-ProteinID:
XP_027426394
UniProt:
A0A6J2B3G5
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All DBs
Position
6:complement(84135742..84184619)
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AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPMAME
HQPPYIVAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRRKLLTFLEIS
GYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAEEYCHKHYDQNR
DGSKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccagtgccaatactagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggcttcttgttggcaccaaacaaggacaccttcttctctat
aggatccggaaggacgttggttgcaacaggtttgaagtgacattagagaaatccaataaa
aacttctccaaaaagattcagcagatccacgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttatgtccatgacttactgacatttcaacaaatcactacggtt
tcaaaggcaaagggagcttcactgttcacatgtgacctccagcacacagagaccggtgag
gaggtgctgcggatgtgtgtggccgtcaaaaagaagctgcagctctacttctggaaggac
agggaattccatgaattgcagggggactttagtgtaccagatgtgcccaagtccatggcc
tggtgcgaaaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaagggtccatcaaagagctctttccaacaggaaaacagctggagccattagttgca
cctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaaatgtgccttgaactggacagacataccaatggccatggag
caccagcctccctacatcgttgcagttttgcctcgatatgtggagatccgaacatttgaa
ccaaggcttctggtccagagcattgaattgcaaaggccccgcttcattacctcaggagga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctacagctcgca
gagatgaaagatgattctgacagcgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcctacccatgtgatgggcctgtacccggacctgctgcccacagactac
aggaagcagctgcagtatcctaacccgctgcctgtgctctcgggggctgaattggagaag
gcacacttagctctgattgactacctgacacagaaacgaagccagttggtaaagaagctg
aatgactctgatcaccagtctagcacctccccgcttatggaaggcactcccaccatcaaa
tccaagaagaagctgttgcaaatcattgacaccaccctgctcaagtgctacctccatacg
aacgtggccctagtggcccctctgctgcgcctggagaacaaccactgccacatcgaggag
agcgagcacgtgctgaagaaggcgcacaagtacagtgagctgatcatcctctacgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaggccaactcg
cctctgaaaggccacgagaggacagtgcagtatctgcagcatttgggcacagaaaacctg
catttgattttttcctactccgtgtgggtgctgcgagacttcccagaggatggcctgaag
atctttaccgaagacctcccggaggtggagtctctgccacgtgaccgagtgctcggcttc
ttagtggagaattttaagggtctggctattccttatctggaacatgtcatccacgtttgg
gaggagacaggctctcggttccacaactgcctgatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaaactccagttcctgctgga
gaggaggagggtgagctgggagagtaccgacggaagctccttacgttcttggaaatttct
ggctactatgatccaggccggctgatctgtgactttccttttgacggcctcttagaagag
cgcgcactgctgctgggccgcatggggaagcacgagcaagcgctcttcatctacgtgcac
atcctgaaggacacaaagatggccgaggagtactgccacaagcattacgaccaaaacaga
gatggcagcaaagacgtgtatctgtccctgctccggatgtacctgtcgccccccagtgtt
cactgcctgggaccaatcaagctggaactgctggaaccacaagccaacctccaggccgcc
ctgcaggtccttgagctgcaccatagcaagctggacaccaccaaggccatcaaccttcta
ccagcaaacactcagattaacgatatacgcatctttctggaaaaggtcttggaagaaaat
gcacaaaaaaaacggttcaatcaagtgctcaagaaccttctccatgcagaatttctgagg
gtgcaggaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtc
tgcatggtgtgtaagaagaagattgggaacagtgcatttgcaagataccccaacggagtg
gtcgtgcactacttctgttccaaagaggtcaacccggctgacacctga
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