Zalophus californianus (California sea lion): 113909867
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Entry
113909867 CDS
T07874
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04820
Cytoskeleton in muscle cells
zca04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113909867 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
113909867 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113909867 (COL11A1)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113909867 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113909867
NCBI-ProteinID:
XP_027427298
UniProt:
A0A6J2BAS3
LinkDB
All DBs
Position
4:complement(86690920..86886900)
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AA seq
1806 aa
AA seq
DB search
MERWSSRWKTKRWLWNFTITTLALTFLFQAREVRGAAPVDVLKALDFHNSPEGISKTTGF
CTNRKNSQGSDTAYRVSKQAQLSAPTKQLFSGGNFPEDFSILFTIKPKKGIQSFLLSIYN
EHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTINIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS
PDCDSSVPKAAQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAEFVTETPTVTEETIAQTEA
NIVDDFQEYSYGTEESYQTEAPRHVSGPNEPNPVEEVFTEEYLTGEDYDSQRKNSEDTLY
ENKGIDGRDPDLLVDGDLGEYDFYEYKEYEDKPTSPTNEEFGPGVPAETDITETSINGHG
GYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLP
GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP
GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR
GFDGLPGLPGDKGHRGERGPQGLPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP
GPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP
GLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP
GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKP
GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD
GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSK
GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEA
GNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGPAGQDGVGGDKGEDGDPGQQGPPGPSGEAGPPGPPGKRGPPGAAGSEGRQGEKGAK
GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPVGPPGLP
GLKGEPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPP
GPPGLPGPQGPKGTKGSAGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAEN
MQADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDG
EYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKL
LSYLDVEGNSINMVQMTFLKLLTASARQNFTYTCHQSAAWYDASAGSYDKALRFLGSNDE
EMSYDNNPYIKALYDGCATRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVG
PVCFLG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctggaatttcaccataaca
accctcgcattgactttcctcttccaggctagagaggtcagaggagctgctccagttgat
gtactaaaagctctagattttcacaactctcctgagggaatatcaaaaacaacaggcttt
tgcacaaacagaaagaattcacaaggttcggatactgcttacagagtttcaaagcaagca
caactcagtgctccaacaaaacagttattttcaggaggaaattttccagaagatttttca
atattatttacaataaaacccaaaaaaggaattcagtctttccttttatctatatataat
gagcacggtattcaacaaattggtgttgaggttgggagatcacctgttttcctgtttgaa
gaccacactggaaaacctgccccagaagactatcccctcttcagaactattaacattgct
gatgggaagtggcatcgggtagcaatcagcgtggagaagaaaactgtgacaatgattgtt
gattgtaagaagaaaaccacaaagccacttgatagaagtgagagagcaatcgttgacacc
aacggaatcacggtttttggaacaaggattctggatgaagaagtttttgagggggacatc
cagcagctgttgatcataggtgaccccaaagccgcgtatgactactgtgagcattacagc
ccagactgtgactcttcagtgcccaaggctgctcaggctcaggaaccgcagattgatgag
tatgcacctgaggatataatggaatatgactatgagtatggggaagcagagtataaggag
gctgaatttgtaacagaaacacccactgtaactgaggagacaatagcacaaactgaggca
aatatcgttgatgattttcaagaatacagctatggaacagaggaaagttaccagactgaa
gctcctaggcacgtatctggaccaaatgagccaaatccagttgaagaagtatttactgaa
gaatatctaactggagaggattatgattcccagaggaaaaattccgaggatacactatat
gaaaacaaaggaatagacggcagggaccctgaccttctggtagatggagatttaggcgaa
tatgatttttatgaatataaagaatatgaagataaaccaacaagtcccactaatgaagaa
tttggtccaggtgtgccagcagaaacagatatcacagaaacaagcataaatggccatggt
ggatatggagaaaaagggcagaaaggagaaccagcagtagttgaacctgggatgcttatt
gaaggaccacccggaccagcaggacctgcgggtcttatgggtccccctggtctacagggc
cccactggaccccctggtgaccctggagagaggggtcccccaggacgtcctggtttacca
ggggctgatggtctacctggtcctcctggtaccatgttaatgttaccgtttcgttatggt
ggcgatggttccaaaggaccaaccatctctgctcaggaagctcaggcccaggcgattctt
cagcaggctcggattgctctgagaggtccacctggcccaatgggtctaactggaagaccg
ggtcctgtgggggggcctggttcctctggcgccaaaggtgagagtggtgatccaggtcct
cagggccctcgtggtgttcaaggtccgcctggtccaacgggaaaacctggaaaaaggggt
cgtccaggtgctgatggaggaagaggaatgccaggagaacctggggcgaagggggatcgg
ggatttgacggacttccgggtctgccaggtgacaaaggtcacaggggtgaacggggtccc
caaggtcttcctggtcctcctggagaagatgggatgaggggagaagatggagaaatagga
ccgaggggtcttccaggtgaagctggcccacgaggtctgctgggaccaagggggactcca
ggacctactgggcagcctggtattgcgggtgtagatggccccccaggaccaaaaggaaac
atgggtccccaaggggagcctggacctccagggcagcaagggaatccaggacctcagggt
cttcctggtccacaaggtccaatcggtcctcctggtgaaaaaggaccacaaggaaaacca
ggccttgcaggacttcctggtgctgatgggcctcctggtcatcctgggaaagaaggccag
tctggagaaaagggtgctctgggtccacctggtccacagggtcctattggctatcctggt
ccccgaggagtaaagggagcagatggtgtcagaggtctcaagggatctaaaggtgaaaag
ggtgaagacggttttccaggattcaaaggtgacatgggtcttaaaggagatagaggagaa
gttggtcaagtgggtccaagaggagaagatggccctgaaggacccaaaggtcgagcaggt
ccaactggagaccctggtccttctggtcaagcaggagaaaaggggaaacttggtgttcca
ggattaccaggatatccaggaagacaaggtccaaagggttccacgggatttcctggattt
ccaggcgccaatggagagaaaggtgcccggggcgttgctggcaaaccaggccctcggggt
cagcgtggtccaacgggtcctcgaggttcaagaggcgcgagaggccccactgggaaaccc
ggcccaaagggcacttcaggtggtgatggccctccaggccctcctggtgaaagaggccct
caaggacctcagggtccagttgggttccctggaccaaaaggccctcctggtccacctggg
aaggatggcctaccaggacaccctggacaacgtggagagactggatttcaaggcaagact
ggcccgcctgggccagggggtgtcgttggaccacagggaccaactggcgagactggtccg
ataggcgaacgaggacatcctggccctccgggccctcctggtgagcagggtcttcctggt
gctgcaggaaaagaaggtgcgaagggtgacccaggtcctcaaggtatctcagggaaagac
gggccagcaggacttcgtggtttcccaggtgaaagaggtcttcctggagctcagggtgca
cctggactgaaaggaggggaaggtccccagggcccaccgggtccagttggctcaccagga
gaacgtggatcagcaggtacagctggcccaattggtttgccagggcgtccaggcccccag
ggtcctcctggtccagctggagaaaaaggtgctcctggagaaaaaggtccacaagggccc
gctgggagagatggagtccaaggccctgtgggtctcccagggcctgctgggccggcgggc
tcccctggagaagatggggacaagggtgaaattggtgaaccgggacagaaaggcagcaag
ggtgacaaaggagaaaatggtcctcctggtcccccaggtcttcaaggtcctgttggtgcc
cctggcattgctggcggtgatggtgagccgggtcccagaggtcagcaggggatgtttgga
caaaaaggtgatgagggtgccagaggtttcccaggacctcctggtcccataggtcttcag
ggtctgccgggcccacctggtgaaaaaggtgaaaatggggatgttggtcccatgggtcca
cctggtcctccaggcccaagaggcccacaaggtcccaatggagctgatgggccacaagga
cccccaggatccattggttcagttggcggtgttggagaaaagggtgaacctggagaagca
gggaacccagggcctcctggggaagcgggcacaggtggccccaaaggggaaagaggagag
aaaggagaagctggtccgcctggtgctgctggacctcctggagctaagggaccaccaggt
gatgatggcccgaagggtaacccgggtcctgttggttttcctggagatcctggtcctcct
ggggaacctggccctgcaggtcaagatggtgttggtggtgacaagggtgaagatggagat
cctggtcaacagggtcctcctggcccatctggtgaggctggcccaccaggtcctcctgga
aaaagaggtcctcccggagctgcaggttcagagggaagacaaggtgaaaaaggtgctaag
ggagaagcaggtgccgaaggtcctcctggaaaaactggcccagttggtcctcagggacct
gccggaaagcctggtccagagggtcttcggggcatccctggcccggtgggagaacaaggt
ctccctggagctgcaggccaagatggacctcctggtcctgtgggacctcctggcttacct
ggcctcaaaggtgaacccggctccaagggcgagaagggacatcctggtttaattggcctg
attggtcctccaggtgaacaaggtgaaaagggtgacagaggactccccggaactcaagga
tctccaggagcaaagggagatggaggaattccaggtcctgctggtcccataggtccacct
ggtcctccaggcttaccaggccctcaaggaccaaagggcaccaaaggctctgctggacct
gccggccagaagggtgacagtggtcttccagggcctcctgggcctccgggtccacctggt
gaagtcattcaacctttaccaatcttgtcacccaaaaaaacaagaagacatgctgaaaac
atgcaagcagatgcaggtgataatattcttgattactcagatggaatggaggaaatattt
ggttccctcaattccctgaaacaagacatcgaacatatgaagtttccaatgggtactcag
actaacccagcccgaacttgcaaagacctgcaactcagccatcctgacttcccagatggt
gaatattggattgatcctaaccaaggatgctcaggagattccttcaaagtttactgtaat
ttcacgtctggtggtgagacttgcatttatccagacaaaaaatctgagggagtaagaata
tcatcatggccaaaggagaaaccaggaagctggtttagtgaatttaagagaggaaaactg
ctttcctatttagatgttgaaggaaattccattaatatggtgcaaatgacgttcctgaaa
ctgctgactgcctccgcccggcaaaatttcacctacacctgtcatcagtcagccgcctgg
tacgatgcgtcagcgggaagttacgacaaggcacttcggttcctgggatcaaatgatgag
gagatgtcctatgacaacaacccttacatcaaagcactgtatgatggctgtgcaaccaga
aaaggctatgaaaaaactgtgattgaaatcaatacaccgaaaattgatcaagtacctatc
gttgatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggt
cctgtttgtttccttggctaa
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