Zalophus californianus (California sea lion): 113912472
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Entry
113912472 CDS
T07874
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca05014
Amyotrophic lateral sclerosis
zca05017
Spinocerebellar ataxia
zca05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
113912472 (ATXN2)
05017 Spinocerebellar ataxia
113912472 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
113912472 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113912472 (ATXN2)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113912472 (ATXN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
113912472
NCBI-ProteinID:
XP_027431380
UniProt:
A0A6J2BHI5
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Position
14:complement(9214189..9350509)
Genome browser
AA seq
1139 aa
AA seq
DB search
MSLKPQQQQQQQQQPPAAASARKPGGSGGLLTSPAAAPSPSSVSSSSAVASSSSAAAASA
GGGRPGLGRGRNSKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKT
YSPKCDLVLDAAHEKTMESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARRDAFTDS
AISAKVNGEHKEKDLEPWDAGELTTSEELEALENDVSNGWDPNDMFRYNEENYGVVSTYD
SSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQR
NSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFN
PNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPP
SHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHTPPS
EAAAPPAARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPGGPVLASPQAGIIP
AEAVAMPVPAASPTPASPASNRAVTPSIEAKDSRLQDQRQNSPAGNKENMKPSETSPSFS
KTENKGISPIVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGEKSRDLIKDKI
EPNAKDSFIENSSSNCTSGSSKPNSPSISPSILSNTEHKRGPEVTSQGVQTSSPGCKQEK
DDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAP
VYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQS
TMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNA
RMMAPPAHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYA
HPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIY
HAGLAPTPPAMTPASNTQSPQNSFPTAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSG
MVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaagccccagcaacagcagcagcagcagcagcagccgcccgcggccgccagt
gcccgtaaacccggcggcagcggcggccttctcacgtcgcctgccgccgcgccgtcgccg
tcctccgtctcatcgtcctcggccgtggcttcctcctcctcggcggcggcggcgagcgca
ggcggcgggcgacccggcctgggcagaggtcgaaacagcaaaggactgcctcaatccacg
atttcttttgatggaatttatgcaaatatgaggatggttcatatacttacgtcagttgtt
ggatccaaatgtgaagtacaagtgaaaaacggaggtatatatgaaggagtttttaaaaca
tacagtcctaagtgtgatttggtacttgatgctgcacatgagaaaactatggaatccagt
tcggggccaaaacgtgaagaaataatggagagtattttgttcaagtgttcagactttgtt
gtggtacagtttaaagatatggactccagttatgcaagaagagatgcttttactgattct
gctatcagtgctaaagtgaatggtgaacacaaagagaaggacctggagccctgggatgca
ggtgaactcactaccagtgaggaactggaggctttggaaaatgatgtatctaatggatgg
gatcccaatgatatgtttcgatataatgaagaaaattatggtgtagtgtctacatacgat
agcagtttatcttcatatacggtacccttagaaagggataactcagaagaatttttaaaa
cgagaagcaagggcaaaccagttagcagaagaaattgaatcaagtgcccagtacaaagcc
cgggtggccctggaaaatgatgataggagtgaagaagaaaaatacacagccgttcagaga
aattccagtgaacgtgagggccacagcataaacactagggaaaataaatatattcctcct
ggacaaagaaatagagaagtcatatcctggggaagtgggagacagaattcaccgcgtatg
ggccagcctggatcgggctccatgccatcaagatccacctctcacacttcagatttcaac
ccgaattctggttcagaccaaagagtagttaatggaggtgttccctggccatcgccttgc
ccatctccttcctctcgcccaccttctcgctaccagtcaggtcccaactctcttccacct
cgggcagccacccctacacggccgccctccaggcccccctcgcggccatccagacccccg
tctcacccctctgctcatggttctccagctcctgtctctactatgcctaaacgcatgtct
tcagaagggcctccaaggatgtccccaaaggcccagcgacaccctcgaaatcacagagtt
tctgctgggaggggttccatttccagtggcctagaatttgtgtcccataccccaccaagt
gaagcagctgctcctccagcagcaagaactagtcctgcggggggcacatggtcatcagtg
gtcagcggggttccaagattatcccctaaaactcacagacccaggtctcccagacagaac
agtattggaaatactcctggtggaccagttcttgcttctcctcaggccggtattattcca
gctgaagctgttgctatgcctgttccagctgcatctcctacgcctgccagtcctgcatcc
aacagagctgttaccccatctattgaggctaaggattccaggcttcaagatcagaggcag
aactctcctgcaggaaataaagaaaatatgaagcccagtgagacatcacctagcttctca
aagactgaaaataaaggtatatcaccaattgtttctgaacatagaaagcaaattgatgac
ttaaagaagtttaagaatgattttaggttacagccaagttctacttctgaatctatggat
caactgctaaacaaaaatagagagggagaaaaatcaagagatttgatcaaagacaaaatt
gaaccaaatgctaaggattctttcattgaaaatagcagcagcaattgcaccagtggcagc
agcaaaccgaacagtcccagcatttccccttcaatcctcagtaacacggagcacaagagg
ggacctgaggtcacatcccaaggggttcagacgtccagtccaggatgtaaacaagagaaa
gatgataaagaggagaagaaagatgcagctgagcaagtgagaaaatcaactttgaatcct
aatgcaaaggagttcaaccctcgctccttttctcagccaaagccttctaccaccccaact
tcacctcgtcctcaggcacaacctagcccatctatggtgggtcatcagcagccagctccg
gtgtatactcagcctgtctgttttgcaccaaatatgatgtatccggtcccagtgagcccg
ggcgtgcaacctttataccctatacctatgacgcccatgccagtgaatcaagccaagaca
tatagagcaggtaaagtaccaaatatgccccaacagcggcaagaccagcatcatcagagc
accatgatgcacccagcctcagcagcgggccccccaattgtagccaccccaccagcttat
tccacacaatatgttgcctatagtcctcagcagtttccaaatcagcctcttgttcagcat
gtgccacattatcagtctcagcatcctcatgtctatagtcctgtgatacagggtaatgct
agaatgatggcaccgccggcacatgcccaacctggtttagtgtcttcttcagcaactcag
tacggggctcatgagcagacgcatgcgatgtatgcatgtcccaaattaccatacaacaag
gagacaagcccttctttctactttgccatttccactggctcccttgctcagcagtatgcg
cacccgaatgctaccctgcacccacatactccacatcctcaaccttcagctacccccact
ggccagcagcagagccagcatggcggaagtcatcctgcacccagtcctgttcagcaccat
cagcaccaggccgcccaggctctccatttggccagtccacagcagcagtcagccatttac
cacgcggggctcgcaccaaccccacctgccatgacccctgcctccaatacgcagtcgcca
cagaatagtttcccaacagcacaacagaccgtctttacaatccatccttctcacgttcag
ccggcatacaccaatcctccccacatggcccacgtacctcaggctcatgtacagtcagga
atggttccttctcatccaactgcccatgcgccaatgatgctaatgacgacacagccaccc
ggcggtccccaggccgccctcgctcaaagtgcactacagcccattccagtctcgacaaca
gcgcatttcccctatatgacgcacccttcagtacaagcccaccaccaacagcagttgtaa
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