Zalophus californianus (California sea lion): 113914280
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Entry
113914280 CDS
T07874
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113914280 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113914280 (PATL1)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113914280 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
113914280 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
113914280
NCBI-ProteinID:
XP_027435158
UniProt:
A0A6J2BZJ1
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All DBs
Position
11:complement(101837334..101868715)
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AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGDRVSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLPPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQVLPPAPGFRAFFSAAPPAAPPPPPQHSPGPGPHLQNLRSQAPMFRPDTTHLHP
QHRRLLHQRQQQNRNQHRSLNGAGDRGSHRSSQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGEGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALADERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSTAVPAPSNPHLAAVLQNKFGLSLLLVVLSRGEDLQSSDPATESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttagaggattgtcctctggatgaagatgaagatgcatttcag
ggcttgggagaagaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gccgttgatgatgattggcaggaagcacatgagcgcctggctgaattggaagagaagctg
ccagtggcagttaatgaacaaacaggcaatggagaaagggatgagatggacttgttgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgagggcagtgcagaccaggccagttctgcaaccccaaccaggaagt
ctcaattccagcatctgggatggatctgaagttctgagacgaatccgagggccactgctt
gctcaggaaatgcctacggtgtctgtattagaatatgccctgcctcagaggcccccacag
ggtccagaagatgatcgagacctttctgagcgcgcattaccacggcggtcaacttcacct
atcattgggagtcctcctgttagagccgtccccataggcaccccacctaagcagatggct
gtacccagcttcaaccaacagatcctgtgtccgaagcctgttcatgtccgacccccgatg
ccaccacgttatcctgctccctatggtgacagagtatctccgaaccagctctgcagtgtc
ccgaattcttccctactcggtcaccctttccctcctagtgttcctcctgttctcagcccc
ctccagagagcacagcttcttggaggagcacagctaccacctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccgcttgctgccatgaatcccaagttg
ctgcaagggcgagtagggcaggtgcttcccccagcacctggcttccgtgccttctttagt
gctgcgccccctgccgctccgccgcctccgccccagcactcccctggcccagggccgcac
ctgcaaaacctaagatctcaggctccaatgtttagaccagacacaactcacctccatcca
cagcatcgtcggctcttgcatcagagacagcaacagaacagaaatcagcatcgcagtctc
aatggtgccggagacagagggagtcaccggagcagtcaggaccatctccgcaaggacccc
tatgccaacctcatgctgcagcgagagaaggattgggtctctaaaatccagatgatgcag
ctgcagagcactgatccctacctggacgatttttattaccagaattactttgaaaaactg
gagaaactgtcagctgctgaagaagtacaaggcgaaggcccgaaaaaggagcgcaccaag
ctcattacccctcaggtggccaaactggagcacgcctataagccagtgcagttcgagggc
tctttgggaaagcttactgtctctagtgtgaataacccccgaaaaatgatcgatgctgtg
gtgacatcgcggagtgaggatgatgagacaaaagaaaagcaggttcgggacaagagacga
aaaacccttgtcatcattgaaaaaacctatagtttactcctggatgtggaggattatgaa
aggcggtatctcctaagtctagaagaagagcgacctgccctggcggatgaaagaaagcac
aaaatttgtagcatgtatgacaacttaagggggaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgtatt
cttcctttcctctccacagagcaagcagctgacattctcatgacaacagccaggaatctc
ccttttcttatcaagaaggatgcacaagatgaggtgctgccatgcttactgagtcccttc
tctctgctcctctatcaccttccgtcagtgactgtcaccagccttctgcaacagctcatg
aacctacctcagagcacagccgtaccagcaccctccaaccctcacctcgctgctgtgctc
cagaacaagtttggcctgtcactgctcctcgtcgtcctgagccgtggggaagacctacag
agttcagaccctgctacagaatcaacacagaacaaccagtggacggaggtgatgttcatg
gcgacccgagaacttctgcggattccccaagcagccctggccaagccaatctctataccc
acaaacctggtgtccctcttttctcgctacgttgaccgacagaaactgaacttgctggag
acaaagctgcagctagttcaggggatccgataa
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