Zalophus californianus (California sea lion): 113916505
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Entry
113916505 CDS
T07874
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
113916505 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zca04147
]
113916505 (COL18A1)
00535 Proteoglycans [BR:
zca00535
]
113916505 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113916505 (COL18A1)
Exosome [BR:
zca04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113916505 (COL18A1)
Proteoglycans [BR:
zca00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
113916505 (COL18A1)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113916505 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
113916505
NCBI-ProteinID:
XP_027438766
UniProt:
A0A6J2C5P1
LinkDB
All DBs
Position
1:214857990..214907675
Genome browser
AA seq
1725 aa
AA seq
DB search
MARLPGSRLGPPLLLLLVTYCLTAARADLLSLNWLWSTRTDGPTAELVSEPPGSPHGQPR
EDTGTRAAPQHGPTEQGRAPASSELPVERPEPGPGGTSPAGPDTKEENIAGVGAKILNVA
QGIRSFVQLWDDATPTTSPPGAEAPAPVTPTPPLTLPGPSSAPQENGTALWLGSWAPSSP
DTQRTEAGTLPVPTQLPPFLGGRSPPPPAAGRASPSSAPGGAPPWGSWQSPGRPQDRDSG
GLLRMAARPGQQHRPPGIRRRTPPLLPLVTGPLGALTGPSARSSDPPTLVSQIPLSAGPG
DGGARAPHVANSVGPGLANRSALLGADPLTPAGQPVPAAGGRCLPLPPSLPVCSHLGIGR
AWLPNHLRHGSSEEVRAAARAWGHLLQTHCHRFLAWFFCLLLAPPCGAGPPPAPPPCRQF
CEALEDACWGHLDGGGLPVSCASLPAQEDGLCVFIGPGAESLGTEVGLLQLLGEPPPPQV
TQVEDPDVGPAFVFGLDANSGQVARYHFPSPFFRDFSLHFHVRPATEDAGVLFAITDAAQ
AVVSVGVRLSGVRDGHQHIQLLYTEPGATRTHTAASFRLPAFTGQWTRFALSVDGATVAL
FVDCELFQRVPLVRSPRGLELEPGAGLFVAQAGGADPDKFQGMIAELRVRGDPHVSPLHC
LEEDDEGGGRVSGDFGSGLEETREPLREQSGPSPKPSLPEAPPVTSPPLAAGRDVEDSRT
EEIEEETTVSSLGARILPGLEAVTTGSVWSPGGGLEEGPAVQSPHAWPVPGPQGPPGPLG
PPGKDGAPGRDGEPGDPGEDGRPGDPGPQGFPGTPGDAGPKGEKGDPGVGPRGPPGPQGP
PGPPGPSFRRDKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSS
DVPGPAGLPGVPGRDGAPGLPGTPGPPGPPGKEGGPGKMGQKGSPGEVGAPGPKGSKGDP
GPVGAPGENGLAGAPGPAGPPGPPGPPGPPGPELAAGFDDMEGSGGPFWSTAQGASGSQG
PPGPPGIKGDPGITGPPGAKGEVGAEGPPGFPGLPGREGSAGAQGPKGEKGTQGEKGDPG
RDGVGQPGLPGPPGPPGPVVYMSEQDKVLGGVPGPEGRPGFAGFPGPAGPKGDLGSKGQR
GLPGPKGEKGEPGPLFSPDGSMLAPAQKGAKGETGFRGPPGPYGRPGHKGEIGFPGRPGR
PGMNGLKGEKGEPGHSSIGFGMRGPPGPPGPPGPPGPPGTPIYDSNAFMESGRPGPPGLP
GLQGPSGPKGDKGDVGPPGPPGQFPFDLLQLGTEMKGEKGDRGGTGQKGEQGAPGGGGFF
GSSVPGPPGXPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPGPPGPPGP
PGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGTSSGVRIWATYPTMLDKVPGVPEGWLI
FVAEREELYVRVRDGLRKVLLGPRTPLPRGTDNEVAALQPPVGNPYPRRELTHSTARPWR
ADDILASPPRLPDPQPYPGAPQHGSYLHFQPARPTGGPTHTHTHQDYHPVLHLVALNSPQ
PGGMRGIRGADFQCFQQARAVGLAGTFRAFLSSRLQDLYSVVRRADRTSVPIVNLRDEVL
FPSWEALFSGSEGRLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTDSYCETWR
TEAAAATGQASSLLAGRLLAQKATGCHNTLIVLCIENSFMTSFSK
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atggctcggctccccggcagccgcctgggccccccgctgctgcttctcttggtcacatat
tgcctcacggccgcccgcgctgacctgctgagcctgaactggctgtggtccactaggacc
gacgggcccacagccgaactggtctctgagcccccggggagcccacatgggcagcccaga
gaggacaccggcacacgcgcggccccccagcatggccccacggagcaggggagagcccct
gccagctcggagctccccgtggagaggccggagcctggcccgggcggtacctcccccgcg
ggccccgacacgaaggaggagaacatcgccggcgtgggagccaagatcctgaatgtggct
cagggcatccggagctttgtccagctgtgggatgacgccactcccaccacaagccccccc
ggggcagaggcgccagcccctgtgacccccacgccccccctcaccctccccgggccctcc
agcgccccccaggagaacgggaccgccctctggttgggcagctgggccccaagctctccg
gacacccagaggaccgaggccggcaccctgccagtgcccacccagctgcctcccttcctg
ggcgggcgctcgccaccaccacctgctgcaggtagagcttctccgtcctctgcgccaggt
ggggcccctccctgggggagctggcagtccccggggcggccccaggatcgggacagcgga
ggacttctgcgcatggcagcccgtcccggccagcagcaccgaccccctggcatccgcaga
cgcacgcctcctctgctccccctggtgacgggacccctgggcgctctcaccggcccctcg
gctcgctcctccgacccccccaccctggtgtctcagatcccgctctcagctggccctggg
gacgggggcgctcgggctcctcacgtggctaactctgtggggcctggtcttgctaatcgc
tctgcactgctcggggcggacccgctgacccccgccgggcagcctgtccctgccgccggc
ggccgctgcctgcccctgcctccctccctgcccgtctgcagccacctgggcattgggcgc
gcctggctgcccaaccacctgcggcacgggagcagcgaggaggtgcgggccgccgcccgg
gcatgggggcacctcctccagacgcactgtcaccgcttcctcgcctggttcttctgcctg
ctgctggccccgccctgtggcgctggccctccgcccgcgcctccgccctgccgccagttc
tgtgaggccctggaggacgcgtgctggggccacctggacgggggcgggctgccggtctcc
tgtgcctcgctcccggcccaggaggacggcctctgcgtgttcattgggccgggtgcagaa
agcctgggcacggaggtggggctcctgcagctgcttggagagcccccacccccgcaggtc
acgcaggtggaagaccccgacgtcgggccggccttcgtctttggcctggatgccaacagc
ggccaggtggcccggtaccacttccccagcccgttcttccgtgacttctcactgcacttc
cacgtccggcctgccaccgaggatgcgggggtgctgtttgccatcacggacgcggcccag
gcggtggtgtccgtgggcgtgaggctgtcgggcgtgcgtgatgggcaccagcacatccag
ctgctgtacaccgagcccggggccacgcggacccacacagccgccagcttccgtctgccc
gccttcaccggccagtggacgcgcttcgccctcagtgtggacggcgcgaccgtggcgctg
tttgtggactgcgagttgttccagagggtgcccttggtgcgctccccgcggggcctggag
ctggagcccggcgctggcctcttcgtggcccaggctggaggagcagatcctgacaagttc
caggggatgatcgcggagctgagggtgcgcggggacccccacgtgagccccctgcactgt
ctggaggaggacgatgagggcggcggcagggtgtctggagacttcgggagcgggctggag
gagacccgggagcctctcagggagcagtcgggtccgtcgcccaaacccagcctccccgag
gctcccccggtcacttctccgcccttggctgcaggcagagatgtggaagactccagaact
gaagaaatcgaggaagaaaccacggtgtcttccttgggagctcggatcctccccggcttg
gaagcggtcaccacagggagcgtttggagccctgggggaggcctggaagagggtcctgca
gtgcagagtccccatgcatggcctgtacccgggccgcagggcccccctggccccctgggg
cctccggggaaggatggtgcccccggaagggacggtgagccgggggatcccggtgaagat
gggagaccgggcgaccctgggccgcagggcttccctggaaccccaggagacgcgggcccc
aagggcgagaagggggaccctggggttgggccaagaggacccccgggaccccaagggcct
ccagggccgccaggaccctccttcagacgtgacaagctgaccttcattgacatggagggg
tctgggttcggcggtgacctggagagcctccgaggccccagaggcttccctggcccccca
ggacccccgggcgtcccaggcctgcctggagaaccaggccgctttgggatgaacagctca
gacgtcccaggacccgcaggccttcctggtgtgcccgggcgggacggggcccctgggctt
cctggcaccccgggtccaccaggtcctccaggaaaagaaggaggaccagggaagatgggc
cagaaaggcagccccggtgaagtgggcgccccaggacctaagggaagcaagggtgaccct
gggcctgttggcgctcctggggagaatggcttggcaggagcccccggaccagccggacca
ccagggcccccaggaccccctgggccaccaggaccagaactcgccgcagggtttgatgac
atggaaggctctgggggacccttctggtcgacggctcaaggagccagcgggtcgcaggga
ccgcccggcccgcccggaatcaagggggatcctggaataaccggaccaccgggcgccaag
ggagaagtcggggccgaaggacctcccgggttccccggcctccctggcagagagggctcg
gccggagcccagggacccaaaggagaaaaagggacccagggagagaaaggcgacccaggg
agggatggagtggggcagcctggcctccccggaccccccggacccccggggcctgtcgtc
tacatgtcggagcaggataaagtgctgggaggcgtgccgggacctgagggcaggccgggg
ttcgcgggctttcctggaccggccgggccaaagggagatctgggctccaaaggccagagg
ggcctcccgggacccaagggcgagaagggcgagccgggcccgctcttcagccccgatggc
agcatgctggcccccgcccagaaaggggccaagggagagactggcttccgaggacccccg
ggcccctacggacggccggggcacaagggagagattggcttccctgggcgcccgggtcgc
ccggggatgaacggattgaagggggagaaaggggagccaggacacagcagcatcggcttt
ggcatgaggggtccacccggtcccccagggcctccggggcccccaggccctcccgggact
cccatctatgacagcaacgcctttatggagtctggccgccctggacccccaggattacca
gggctccaggggccttctggacccaagggtgacaaaggagatgtgggccctccaggacca
ccagggcagttcccattcgacctcctccagctggggactgaaatgaagggggagaagggt
gaccgagggggcaccgggcagaaaggagaacagggtgcgcctgggggcggcggattcttc
ggctcaagtgtgcccggcccccccggcnncccccccggcccgccaggctaccccgggatt
ccgggtcccaagggagagagcattcggggccagcctggcccacctggacctcagggaccc
cctggcatcggccatgaggggcgtcagggacctcctgggccccctggaccccctggtccc
ccaggacccccttcctttccgggcccttacaggcaaaccatcagtgttcctggcccccca
ggcccacctgggccccctgggccccctggaaccatgggcacctcctctggggtgaggatc
tgggccacgtatccgaccatgctggacaaggtgccgggggtgccggagggctggctcatc
ttcgtggctgagagggaggagctgtatgtccgggtccgcgacgggctccggaaggtcctg
ctggggccgcggacgccgctcccacgcgggacggacaacgaggtggccgccttgcagccc
cccgtgggcaacccgtacccccggcgggagctcacccactccacggcgcggccctggcgg
gcagatgacatcctggccagccccccacgtctgccggacccccagccctaccccggagcc
ccacagcacggctcctacctgcacttccagccagctcgccccactggcgggcccacccac
acccacacccaccaggactaccacccagtgctgcacctggtggcactgaacagcccccag
ccgggcggtatgcgaggcatccgcggggcggacttccagtgcttccagcaggcgcgcgcc
gtggggctggccggcaccttccgcgccttcctgtcttcgcggctgcaggacctctacagc
gtcgtgcgccgggccgaccgcacaagcgtgcccatcgttaacctcagggacgaggtgctg
ttccccagctgggaggccttattctcaggctccgagggtcggctgaagcccggggcccgc
atcttctctttcgatggcagagatgtcctgcagcaccccgcctggccccagaagagcgtg
tggcacggctcagaccccagcggacgccggctgaccgacagctactgcgagacgtggcgg
acagaggctgcagcagccacgggccaggcgtcctcgctgctggctggccggctgctggcg
cagaaagccacgggctgccacaacaccctcattgtgctctgcatcgagaacagcttcatg
acctccttctccaagtag
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integrated database retrieval system
