Zalophus californianus (California sea lion): 113916841
Help
Entry
113916841 CDS
T07874
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03013
Nucleocytoplasmic transport
zca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113916841 (UPF1)
03015 mRNA surveillance pathway
113916841 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113916841 (UPF1)
Enzymes [BR:
zca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113916841 (UPF1)
5.6.2.5 RNA 5'-3' helicase
113916841 (UPF1)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113916841 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
113916841 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
113916841
NCBI-ProteinID:
XP_027439723
UniProt:
A0A6J2CCK6
LinkDB
All DBs
Position
1:14193198..14230512
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGSAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcatacgggcccagttcccagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgacttcaccctc
cccagccagacgcagacgcccccggggggccccggcggccccggaggaggtggcgcgggc
ggcccggttggcgcgggcgcgggctctgcggccggacagctggacgcgcaggttggtgga
ccagagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaactttgaagaagatgaagaagatacctattacacgaaggatctccct
gtgcatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtgggaacacttccggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgtggctgccgaaatgtcttcctcctcggcttcatccctgcc
aaggccgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgttgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagcttcgggcccggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggaaaacccttctgccaccttggaggac
ctggagaagcccggcgtggatgaggagcctcagcacgtgctcctgcggtacgaggacgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggcttatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcacccgtggaggtgactcacaac
ttccaggtggatttcgtgtggaagtcaacctcgtttgataggatgcagagtgcgctgaaa
acgtttgctgtggatgagacctctgtctcaggctatatctaccacaagctgctcgggcac
gaggtggaggatgtgatcatcaagtgccagctgccgaagcgcttcacggcacaggggctc
cctgacctcaatcattcgcaggtttacgctgtcaagactgtactgcagagaccgctgagc
ctgatccagggaccaccaggcacggggaagacggtgacctctgccaccatcgtctaccac
cttgctcggcagggcaatgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatacaccagactgggctgaaagtcgtgcggctctgcgccaagagc
cgcgaggccatcgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccggagctacagaagctacagcagctgaaggacgagacgggggagctgtcc
tctgctgacgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aatgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccgaggctcgccaagatg
cagttccgttccattttaattgatgagagcacccaggccaccgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggtgaccactgtcagctgggccct
gtggtgatgtgcaagaaggcagccaaggccggactatctcaatcactcttcgagcgcctg
gtggtgctgggcatccgtcccatccgcctgcaggtccagtatcggatgcaccctgcgctc
agtgccttcccatccaacatcttctacgagggctctctccagaatggcgtcactgcagcg
gaccgagtgaagaaggggtttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaagaggagattgccagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacgaagctgttgaaggcaggtgccaagcctgac
cagatcggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagattgccagcgtggacgcg
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcggatttttaaacgaccccaggcgacttaatgtggccctgaccagagcgaggtat
ggggtcattattgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcggtctatgat
cggagcagccagggccggccttcaaacatgtacttccagacccacgaccagatcggcatg
atcagtgcaggccccagccatgtggccgccatgaacattcccatccccttcaacctcgtc
atgccccccatgcccccaccagggtattttggacaagcgaatgggccagcagcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggacgtggcgtcccagcca
ttctcccagggcgccctcacccagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcccgagctgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
