Zalophus californianus (California sea lion): 113918823
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Entry
113918823 CDS
T07874
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113918823 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113918823 (XAB2)
03041 Spliceosome [BR:
zca03041
]
113918823 (XAB2)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113918823 (XAB2)
Spliceosome [BR:
zca03041
]
Complex B
Other components
Prp19-related factors
113918823 (XAB2)
Complex C
113918823 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_1
Motif
Other DBs
NCBI-GeneID:
113918823
NCBI-ProteinID:
XP_027443473
UniProt:
A0A6J2CN10
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All DBs
Position
1:6053721..6065686
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPQRPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKRRCVTDPAYEDANNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDDDEDDMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggccgcagcggccggacctcgttttcgaggaagag
gacctcccctatgaggaggagatcatgcggaaccagttctcggtcaagtgctggctccgc
tacattgagttcaaacaaggtgccccgaagcccaggctcaaccagctgtatgagcgggca
ctgaagctgctgccctgcagctacaaactctggtatcgatacctgaaggcacgccgggca
caggtgaagcgtcgctgcgtgactgaccctgcctatgaagatgccaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccgtctgtggctggactactgccaattcctg
atggaccagggccgcgtcacgcacacccgccgcacgtttgaccgtgccctccgggccctg
cccatcacgcagcactctcgtatctggcccctgtacctgcgcttcctccgctcccacccg
ctgcctgagacagctgtgcggggctaccggcgtttcctcaagcttagccccgagagcgca
gaggagtacatcgagtacctcaagtccagcgaccggctggatgaagccgcgcagcgcctg
gccaccgtggtcaatgatgagcgcttcgtgtccaaggctggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccggacaaggtgcagtcgctcaatgtg
gatgccatcatccgcgggggcctcacccgcttcactgaccagctgggcaagctctggtgc
tcgctggctgactactatatccgcagcggccacttcgagaaggctcgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcc
cagtttgaggagagcatgattgcagccaagatggagacagcctcagaactggggcgggag
gaggaagatgatgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcttgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgtccccgggagatcatcaacacatacacggag
gctgtgcagacggtggaccctttcaaggcgacaggcaagccccacacgctgtgggtcgca
tttgccaagttttacgaagacaacgggcagctggatgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgtgagtgcggc
gagctggagctccggcacgagaactatgaccaggccttgcggttgttgcggaaggccacc
gcgctgcccgcccgccgagccgagtactttgacggctcggagcctgtgcagaaccgtgtg
tacaagtcgctgaaggtgtggtcgatgctcgctgacctggaggagagcctaggcaccttc
cagtccaccaaggccgtgtatgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtactttgaggagagcttcaaggcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaaattcatcgcccgctacgggggccgcaagctggagcgagcacgggacctcttt
gaacaggcgctggacggctgccctcccaaatacgcaaagacgctgtacctgctgtacgcg
cagctggaggaggagtggggcctggcccggcacgccatggccgtgtacgagcgcgccacc
agggccgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgtgcggcc
gagatctacggcgtcacccacacccgtggcatctatcagaaggccattgaggtgctgtca
gatgagcacgcccgggagatgtgcctgcggttcgcagacatggagtgcaggcttggcgag
atcgaccgggcacgcgccatctacagcttctgctcccagatctgcgacccccggaccact
ggggctttctggcaaacgtggaaggacttcgaggtccggcatggcaatgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtcaggcagcgccacgggcactgtgtctgacctggcc
cctgggcagagcggcatggatgacatgaagctgctggagcagcgagcagagcagctagcc
gccgaggccgagcgggaccagcccccgcgggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggccgagctggcccagcaagccaacccggaggagatcgag
ctgggtgaggacgacgacgaggacgacatggacctggagcccaatgaggtgcggctggaa
cagcagagtgtgccggccgccgtgttcgggagcctgaaggaggactga
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