Zalophus californianus (California sea lion): 113919419
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Entry
113919419 CDS
T07874
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113919419 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zca03041
]
113919419 (PRPF40A)
Spliceosome [BR:
zca03041
]
Complex A
U1 snRNP components
U1 related factors
113919419 (PRPF40A)
Complex B
113919419 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
113919419
NCBI-ProteinID:
XP_027444238
UniProt:
A0A6J2CQ81
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All DBs
Position
3:complement(118413137..118469260)
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AA seq
934 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ
MMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWT
EHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKES
RWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTT
MSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASNTVGGTGPVVPEPEVTSIVATVVD
NENTVTISTEEQTQLTSTPAVQEQSMEVSSNTGEETAKQETVADFTPKKEEEESQPAKKT
YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ
TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEI
YEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQL
HSMSSWMELYPTISSDIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDIL
KDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE
CQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESE
RSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKT
GKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagcggagcgtggaggcctcatgatggggcaccctggcatgcattatgccccaatggga
atgcaccctatgggtcagagagcgaatatgcctcctgtacctcatggaatgatgccgcaa
atgatgccccctatgggagggccgccaatgggacaaatgcctggaatgatgtcttcagta
atgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgccttaccgcca
ggagtaaataatatggatgtagcagcaggtacaacatctggtgcaaaatcaatgtggacc
gagcataagtcacctgatggaaggacttactactacaatactgaaacaaaacagtctact
tgggagaaaccagatgatctgaaaacacctgctgagcaacttttatctaaatgtccctgg
aaggaatacaaatctgactctggaaagccttactattataattctcaaacaaaagaatcc
cgctgggccaaacctaaagaacttgaggatcttgaaggataccagaataccattgttgct
ggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagcagtaag
caagaggagtgcaccacaacatcaacagccccggttcctacaacagaaattccgaccacc
atgagcaccatggctgctgcagaagccgctgccgctgttgttgccgccgccgccgccgcc
gctgctgccgccgccgcagccaatgccagtgcttccacctctgcttcaaacactgtcggt
ggaactggcccagtcgttcctgagccagaagttacttcgattgttgctaccgttgtagat
aacgagaatacagtgacaatttcaactgaagaacaaacacaacttactagtactcctgct
gttcaggaacagagtatggaagtatccagtaatactggagaagaaacagctaagcaggaa
actgtagctgattttactcccaaaaaagaagaggaggaaagccaaccagcaaagaaaacc
tatacttggaatacaaaggaagaggcaaagcaagcgtttaaagaattattgaaagaaaag
cgggtaccatctaatgcttcatgggaacaagctatgaaaatgatcattaatgatccacga
tacagtgctttagcaaagttgagtgaaaaaaagcaagcctttaatgcttacaaagtccag
acagagaaagaagaaaaagaagaagcacgatcaaaatacaaagaggctaaggaatccttt
cagcgttttcttgaaaatcatgagaaaatgacttccacaaccagatacaaaaaagcagag
caaatgtttggagagatggaagtctggaatgcaatatcggaacgtgatcgtcttgaaatc
tatgaagatgttttattctttctttcaaaaaaagaaaaggagcaagcaaagcagttacgg
aagagaaattgggaagccttaaaaaacatacttgacaacatggctaatgtaacatactct
actacctggtctgaagcccagcagtatctgatggataatccaacttttgcagaagatgag
gaattacagaacatggataaagaagatgcattaatttgctttgaagaacacatccgagct
ttagaaaaggaagaagaagaagaaaaacagaagagtttgctgagagaaaggagacgacag
cgtaaaaatagagaatcttttcagatatttttagatgaactgcacgaacatggacaactg
cattctatgtcatcttggatggaattgtatccaacaattagttccgacattagatttact
aatatgcttggtcaaccggttttttcattaggatcaactgcacttgaccttttcaagttt
tatgttgaggatcttaaagcacgttatcatgatgagaagaaaataataaaagacattcta
aaggataaaggatttgtagttgaagtaaatacgactttcgaagactttgtggccataatc
agttcaactaaaaggtcaaccacgttagatgccggaaatattaagttggctttcaacagt
ttactagaaaaggcagaagctcgtgaacgcgaacgagaaaaagaggaggctcgaaaaatg
aaacgaaaagaatctgcatttaagagtatgttgaaacaagctactcctccaatagaattg
gatgctgtctgggaagatatccgggagagatttgtaaaagagccagcatttgaggacata
actctagagtctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcatgaa
tgtcaacatcatcattcaaagaacaagaaacattctaaaaaatcgaaaaaacatcacagg
aaacgttcccgctctagatcgggatcagattcagatgatgacgacagccattcaaagaaa
aaaagacagcgatcagagtctcggtctgcctcagaacattcttctagtgctgagtctgag
agaagttataagaagtcaaaaaaacataagaagaaaagcaagaagaggagacataaatct
gactctccagagtcagatgctgagcgagagaaggataaaaaagaaaaagaccgagaaagt
gaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagact
ggaaaggattctgggaattgggatacttctggcagtgaactgagtgaaggggaattggaa
aagcgcagaaggacccttttggagcaactggatgatgatcaataa
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