Zalophus californianus (California sea lion): 113919931
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Entry
113919931 CDS
T07874
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04151
PI3K-Akt signaling pathway
zca04382
Cornified envelope formation
zca04510
Focal adhesion
zca04512
ECM-receptor interaction
zca04518
Integrin signaling
zca04820
Cytoskeleton in muscle cells
zca04926
Relaxin signaling pathway
zca04933
AGE-RAGE signaling pathway in diabetic complications
zca04974
Protein digestion and absorption
zca05146
Amoebiasis
zca05165
Human papillomavirus infection
zca05200
Pathways in cancer
zca05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
113919931 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113919931 (COL4A4)
04518 Integrin signaling
113919931 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113919931 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113919931 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
113919931 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
113919931 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
113919931 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
113919931 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
113919931 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
113919931 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
113919931 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
113919931 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zca04147
]
113919931 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113919931 (COL4A4)
Exosome [BR:
zca04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113919931 (COL4A4)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113919931 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113919931
NCBI-ProteinID:
XP_027445726
UniProt:
A0A6J2CQP8
LinkDB
All DBs
Position
3:complement(183492925..183617530)
Genome browser
AA seq
1693 aa
AA seq
DB search
MASIRCSFRWIKPLAADPWSLILILYSVQHAYGSGKKFVGPCGGRDCSVCQCFHEKGSRG
QPGPPGPQGPIGPLGLPGPIGIPGEKGMRGDSGPPGAAGDKGDKGPTGVPGFPGLDGIPG
HPGPPGSRGKPGMHGYNGSRGDPGFPGERGVPGPGGPPGLPGESGEKGNSVFILGAIKGI
QGDRGDPGPPGLPGLRGARGAAGPVGHLGEPGLAGAPGHPGRPGLKGNPGVGVKGQMGDP
GEVGQQGSPGPTLLVQPPDSCLYKGEKGIKGMPGMTGPPGPPGPKGEPGIGAKGEKGIPG
FSGPRGDPGSYGSPGFPGLKGEPGLFGEPGSFGFLGPKGDPGDRGYPGPPGVLITPSLPL
KGPPGDPGRPGRYGETGSVGPPGPPGPSGPPGEARAGMMGPPGPRGLPGHPGFPGAAGIP
GRAESSPGKPGNPGPPGLPGAPGLQGPPGSDVIYCSVGHPGPQGMKGKVGPPGRRGSKGE
KGNAGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGEKGHPGPPGAEGSPGPPGKQG
ASGPPGSKGEKGDMVVSRVKGQKGERGLDGLPGYPGRQGQHGQDGLPGKKGDPGPPGDHE
DAFPGDEGSPGPPGPPGRAGPQGQPGLGFPGPPGERGPPGAPGRPGERGLEGLKGQKGDT
ISCNVTYPGRTGPPGFDGPPGPKGFPGPRGTPGLRCLDGQKGQRGKPGISEIPGPPGGKA
TLPRFRGEMGDPGFGGEEGSSLLGPPGLPGSRGANGQKGVMGDTAYGQPGAPGKRGLSGV
PGAEGHRGDPGRPGFAGPAGRPGFPGLKGPRGREGSAGFPGIPGPPGHSCKGGAPGIAGP
PGVPGAPGQPGAPGWKGQRGDVGPPGPSGMKGLPGVPGRPGAHGPLGLPGVPGPSGDDGL
PGLPGPKGSQGLPGFPGFPGERGKPGPEGRAGRKGDPGEDGRPGFLGDRGVKGAKGERGP
PGDEGEMAIISQKGKTGEPGPPGDDGFPGEEGDKGDPGMQGRKGELGRHGAPGFRRGEPG
RTGQPGLPGSAGPPGSPGPRGIIGFPGFPGDQGEPGSPGSPGRSGIDGMRGPKGDKGDPA
SQFGLPGPKGEPGSLGCPGHPGAPGEQGLPGVQGPTGPPGRPGLPGTSGPPGCPGNQGVP
GLQGPPGEMGDPGPRGMMGDPGAPGLPGKKGPSGSPGLNGLHGLKGQKGAKGASGLHDVG
PPGPVGVPGLKGETGDPGSPGISPPGLSGGRGPPGFPGRPGSPGPAGAVGRAPKGDIPDP
GPPGDQGPPGPDGPRGVPGPPGPPGSVDLLKGEPGDCGLPGPPGPPGMLGPPGQKGFPGC
DGKDGQKGPKGFPGLRGPEGLPGLPGEKGLPGIPGRQGHPGLPGPRGEPGPPADAESCPR
IPGLPGAPGPRGPEGALGAPGARGPPGPGCKGESGPDGRRGEDGLPGSPGPPGSKGDTGE
AGCPGVPGPPGPLGDPGPKGFGPGYLSGFLLVLHSQTDGEPACPAGMPRLWTGYSLLYLE
GQEKAHNQDLGLAGSCLPMFSTLPFAYCNIHQVCHYGRRNDRSYWLASAAPLPRTPLSEE
EIRPYISRCAVCEAPAPVVALHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALM
SPGSCLEDFRAAPFLECQGRQGTCHFFANKYSFWLTTVRPDLQFSSAPSPDTLRESQAQR
QRISRCQVCMKHS
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgataaggtgctcattcaggtggatcaagcccttggccgcagatccctggtca
cttatacttatcctctattctgtacaacacgcatatgggagtggaaagaagtttgtgggt
ccttgcggaggaagagattgctcagtgtgccagtgctttcatgaaaaagggtctcggggt
caaccaggaccaccggggccacagggtcctattggacccctgggactgccaggacccatt
ggcattccaggagagaaagggatgagaggtgacagtggtcctcctggggcagcaggtgac
aaaggtgataagggtccaactggtgttcctggatttccaggtttggatggcatacctggg
cacccagggcctcctggatccagaggcaagcctggcatgcatggctataatggttcacga
ggtgatccagggtttccaggagagagaggagttcctggcccaggaggccccccaggcctt
cctggggaaagtggagaaaaaggaaattcagtgttcattttaggtgccattaaaggtatt
cagggcgacagaggggacccaggacctcctggcttgccgggattgaggggggcgagagga
gcggcgggcccagtaggacatctgggagagcccgggttagccggtgctccaggccatcct
gggagaccgggcttgaagggtaatcctggcgtgggagtcaaggggcaaatgggagacccg
ggtgaagttggccagcagggttctcctggacccaccttattggtacagccacctgattct
tgtctgtataaaggagaaaagggcataaaaggaatgcctggcatgactggacctccagga
ccaccgggacccaagggagaacctggaattggggcaaaaggagagaagggtatccctggg
ttctcaggacctcggggtgatcctggttcctatggatctccaggttttccaggattaaag
ggggaaccaggactgtttggagagcctggatcatttggatttcttggcccaaagggggat
cctggagaccgcgggtacccaggaccaccgggggttttgataactccatctcttccgctc
aaaggccctccaggggatccggggcgccctggccgctacggagaaacggggtctgttgga
ccacctggtcctcctggcccctccggtccaccaggggaagcccgcgcaggcatgatggga
cctcctgggccaagagggcttcctggtcatccgggatttccaggggcagctggtatccct
gggagagctgaatccagtccaggaaagccagggaacccaggaccaccagggttgcccgga
gccccagggctgcagggacctccgggatcagatgttatatattgtagtgttggacaccct
ggaccacaaggaatgaaaggcaaagtgggtcctccgggaagaagaggctcaaaaggagaa
aaaggaaacgcggggctctgtgcctgtgagcccggtcccatgggcccaccgggacctccg
ggacttcctgggagacagggtagtaagggagacttggggctccctgggtggcttggagag
aaaggtcacccaggtcctcctggagctgaaggatctccaggaccaccagggaaacaaggt
gcctcaggaccacctggcagcaaaggagaaaagggtgacatggttgtatcgagagtgaaa
gggcagaaaggagaaagaggtcttgatgggctcccaggatatccaggacgacaggggcaa
catggtcaggatggacttcctggaaaaaagggggatccaggccctccaggggatcatgaa
gacgcattcccaggtgatgaagggtctcctggaccgccgggccccccgggcagagcagga
cctcagggacaaccaggtttgggatttcctggcccaccaggagagagagggccaccggga
gctccaggccgccctggcgagaggggcctcgagggcttgaagggtcagaaaggcgataca
atttcttgtaacgtcacctaccctgggaggacagggcccccaggatttgatgggcctcca
ggaccaaagggatttccaggtcctcggggcactccggggttgaggtgtttggatgggcaa
aaaggtcagcgtggcaaaccaggaatatcagaaatacctggtccacctggtggcaaagca
acattgcctaggtttcgtggtgaaatgggcgatccgggttttggaggtgaagaggggtcc
tcccttcttgggcccccaggcttgcccggttctcgtggagcaaatggtcagaaaggagtc
atgggagacactgcctatggccaaccaggtgccccaggaaagagaggtctttcaggagtg
ccaggggccgaaggacacagaggtgacccaggacgtccaggttttgcagggccagctggt
aggccgggattcccaggtctcaaaggtcccagaggcagagagggaagtgctgggtttcca
ggaatcccgggtccacctggtcattcctgcaaaggaggcgccccagggatagcaggacca
ccgggagtccccggggctccaggccaaccaggtgccccaggttggaaaggacagcgaggg
gatgtggggcctcctggtccatctggaatgaagggcctcccaggagtcccgggacggcca
ggggcacatggtcccctaggacttccaggtgtcccaggcccttcaggggatgatggactg
cctggtcttccaggcccaaagggatcccaggggctgcctggcttccccggtttcccgggg
gaaagaggaaagcctggccccgagggacgtgctggccgtaagggggacccgggagaggac
ggtcggcctggcttcctcggagaccgtggggtgaaaggtgccaaaggagagagaggaccc
ccaggagatgaaggagagatggctatcatttcccaaaaggggaaaactggggaacccgga
cctccgggagatgatggattcccaggagaagaaggtgataaaggcgatcctgggatgcag
ggcaggaaaggagagctgggaagacacggagcacctggatttcgcagaggggagcctggt
agaactgggcagccagggcttcctggctctgcaggccccccaggctcccctgggccaaga
gggattattggttttccgggatttccaggtgaccagggtgagccaggttctccagggtcc
cccggacgttcaggaattgatggaatgagaggacctaaaggagacaaaggtgatcctgca
agtcagtttggcttacctggtccaaagggtgaaccaggtagccttggatgtccaggacat
cccggagcacccggggagcagggcttgcccggtgttcaggggcccacgggaccaccagga
aggccaggactacctggtacctctggaccaccagggtgtccaggtaatcaaggggtgcct
gggctgcagggacctccaggagaaatgggggatcctgggccaagaggcatgatgggagat
ccaggggcaccaggtcttccaggaaaaaaaggtccctccgggtcacctggtctgaacggc
ttgcatggtttaaagggtcagaaaggagccaaaggcgcttcaggtttgcacgacgtgggc
ccacctggtccagtgggcgtacccgggctgaaaggggagacgggagacccagggagcccg
ggaatttctcccccaggcctttctggaggaagaggtccccccggcttcccagggagacct
ggatcccctggtcctgcaggtgccgtaggaagagctcctaaaggggacattcctgaccca
ggtccccccggagatcagggacctcctggccccgacggtccaagaggagtgcccgggccc
ccaggaccccctgggagtgtcgaccttctgaaaggggaaccaggagactgcggtctgccg
gggcctcctggtcccccgggcatgctcggccctccaggacaaaaaggcttcccaggatgt
gatggaaaagatggccagaaaggaccaaaaggattcccagggctgcgggggccagaagga
cttcctgggctccccggggagaagggtttacctggcattccaggcagacaggggcacccc
ggtcttccaggtcccagaggtgaaccagggccacctgctgatgcggagtcctgcccccga
atccctgggctccctggggcaccgggcccgagaggaccagaaggggccttgggggcccct
ggagcaagagggcccccaggaccagggtgcaaaggagagtctgggccggatggcaggagg
ggtgaggatggactcccagggtcccctgggcctcccggaagcaaaggggacacgggagaa
gccggctgccctggagtaccaggccctcctgggccccttggggaccctgggcccaaaggg
tttgggcctggatacctcagtggcttcctcctggttctccacagtcagacagatggcgaa
cccgcctgccccgcgggcatgcccaggctctggacgggctacagcctcttatacctggag
ggacaggagaaggcgcacaatcaagaccttgggctggcagggtcttgcctccccatgttt
agcacgctgcccttcgcctactgcaacatccaccaagtgtgccattacggccggaggaac
gaccggtcctactggctggcgagcgccgcgccgctgcccaggacgccgctgtcggaggag
gagatccgcccgtacatcagccgctgtgcggtgtgcgaggccccggcgcccgtggtggcg
ctgcacagccaggaccagtccatccccccgtgcccgcggacctggaggagcctgtggatc
gggtactcgttcctgatgcacacaggggccggggaccagggaggagggcaggccctcatg
tcccctggcagctgtctggaagatttccgagccgcaccgttcctcgaatgtcaaggcagg
cagggaacttgccacttttttgcaaacaagtatagcttctggctgacgacagtgagacct
gacttgcagttttcctcggcaccctcaccggacaccttaagagagagccaggcccagcgc
cagaggatcagcaggtgccaggtgtgcatgaagcacagttag
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