Zalophus californianus (California sea lion): 113920055
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Entry
113920055 CDS
T07874
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03410
Base excision repair
zca04140
Autophagy - animal
zca04217
Necroptosis
zca04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113920055 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113920055 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
113920055 (HMGB1)
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
113920055 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zca03036
]
113920055 (HMGB1)
03400 DNA repair and recombination proteins [BR:
zca03400
]
113920055 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zca04147
]
113920055 (HMGB1)
Chromosome and associated proteins [BR:
zca03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
113920055 (HMGB1)
DNA repair and recombination proteins [BR:
zca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
113920055 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
113920055 (HMGB1)
Exosome [BR:
zca04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
113920055 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
NOA36
HMG_box_5
Nop14
Motif
Other DBs
NCBI-GeneID:
113920055
NCBI-ProteinID:
XP_027446008
UniProt:
A0A6J2CV96
LinkDB
All DBs
Position
3:71274852..71281080
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgagaggagcacaagaagaagcacccagatgcttcagtcaacttctcagag
ttttctaagaagtgctcagaaaggtggaagaccatgtctgctaaagagaaaggaaaattt
gaagacatggcaaaggcggacaaggcccgttatgaaagagaaatgaaaacttatatcccc
cctaaaggggaaacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcg
gcctttttcttgttttgttctgagtatcgcccaaaaatcaaaggagaacatcccggccta
tccattggtgatgttgcaaagaaactgggagagatgtggaataacactgctgcagatgac
aagcagccttatgaaaagaaggctgctaagctgaaggaaaaatatgaaaaggatattgct
gcataccgagctaaaggaaagcctgatgcggcaaaaaagggagttgtcaaggctgaaaag
agcaagaaaaagaaggaagaggaggaagatgaggaagatgaagaggatgaggaggaggag
gaagatgaagaagatgaagatgaagaagaagatgatgatgatgaataa
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integrated database retrieval system
