Zalophus californianus (California sea lion): 113920081
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Entry
113920081 CDS
T07874
Symbol
COL4A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04151
PI3K-Akt signaling pathway
zca04510
Focal adhesion
zca04512
ECM-receptor interaction
zca04820
Cytoskeleton in muscle cells
zca04926
Relaxin signaling pathway
zca04933
AGE-RAGE signaling pathway in diabetic complications
zca04974
Protein digestion and absorption
zca05146
Amoebiasis
zca05165
Human papillomavirus infection
zca05200
Pathways in cancer
zca05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
113920081 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113920081 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113920081 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113920081 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
113920081 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
113920081 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
113920081 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
113920081 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
113920081 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
113920081 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
113920081 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zca04147
]
113920081 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113920081 (COL4A1)
Exosome [BR:
zca04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113920081 (COL4A1)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113920081 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113920081
NCBI-ProteinID:
XP_027446058
UniProt:
A0A6J2CVE3
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Position
3:2848576..2990460
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AA seq
1670 aa
AA seq
DB search
MGPRLGVWLLLLPAALLLHEERSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI
GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGEPGPLGPPGLPGFAGNPGPPGLPGMKGDPGEIIGHVPGTLLKGERGFPGP
PGTPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPP
GVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGLGEKGEPGRPGPRGKPGKDGEKGEKGS
PGFPGDAGYPGLPGREGFKGDKGEAGPPGPPGIAIGPPGPPGEKGERGYPGTPGLRGEPG
PKGFPGLQGQPGPPGFPVPGQAGAPGFPGERGEKGDQGFPGTSLPGPSGRDGQPGPPGLP
GPPGQPGHTNGIVECQPGPPGDQGPPGIPGQPGLTGEVGEKGQKGDSCLICDTEGLRGPP
GPQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGTPGLMGQPGAKGEPGEIYFDARL
KGDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPXGVGFPGSRGD
IGPPGPPGFGPIGPVGDKGQAGFPGTPGSPGQPGPKGEAGKVVPLPGPPGAQGLPGSPGF
PGPQGDRGFPGTPGRPGLPGEKGTVGQPGIGFPGPPGPKGVDGLPGDVGPPGSPGRPGFN
GLPGNPGVPGQKGEPGIGLPGLKGLPGLPGVPGTPGEKGNIGGPGVPGEHGAVGPPGLQG
IRGDPGPPGLQGPKGAPGAPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMP
GPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGPKGEMGVMGTPGQPGSPGPAGLP
GLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGMPGSMDKVDMGSMKGQKGDQGEKGQT
GPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGIGGTPGAPGLPGPKGSVGGMGLP
GTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQVGLPGIGIPGRPGDKGDQGVAGFPGSPG
EKGEKGSAGTPGVPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPG
TPGPTGPAGQKGEPGRDGIPGSAGEKGEAGLPGRGFPGFPGAKGEKGSKGDVGFPGQAGS
PGIPGSKGEQGFMGPPGPQGQPGLPGTPGHAVEGPKGDRGPQGQPGLPGLPGPVGPPGLP
GLDGLKGDKGNPGWPGAPGTPGPKGEPGFQGLPGIGGSPGITGSKGDMGPPGVPGFQGQK
GLPGLQGVKGDQGDQGFPGSKGLPGPPGPPGPYDVIKGEPGLPGPEGPVGLKGLPGPPGP
KGQQGVTGSAGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGT
PSVDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFST
MPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIAGDNIRPFISRCAVCEAPAMVMA
VHSQTIQIPQCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGR
GTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctgggcgtctggctgcttctgctgcccgccgccctcctgctccacgag
gagcgcagccgggccgcggcgaagggtggttgtgctggctctggctgtgggaagtgtgac
tgccatggagtgaagggacagaagggcgagcgaggcctcccagggttgcaaggtgtcatc
gggtttcccgggatgcaagggcccgaggggccacaggggcccccaggacagaagggtgac
actggagaacccgggctgcctggaacgaaaggcacaagaggaccccccggagcgtcaggt
taccctggaaacccaggactgcctggtattcctggccaagacggtccccccggtccccca
ggtatccccggatgcaatggaacaaagggcgagccagggcctctggggcccccgggtttg
cctggattcgctggaaatcctggaccgccaggattaccaggaatgaagggggatccaggt
gaaatcattggccatgtgcctgggaccctgttgaaaggtgaaagaggatttcctggaccc
ccaggaacaccaggctcgccaggactgccgggcctgcaaggtcctgttggccctccggga
tttaccgggccgccaggtcctccaggccctcctggccctccaggtgaaaaggggcaaatg
ggcttaagttttcaagggccaaaaggcgacaagggtgaccagggggtcagtgggcctcca
ggagtgccaggacaagctcaagttcaagaaaaaggagactttgccactaaaggagagaag
ggtcagaaaggtgaacctggatttcagggaatgccagggcttggagagaaaggggagcct
ggaagaccagggccccgaggaaaacctggaaaagatggcgaaaaaggagaaaaagggagt
ccaggcttcccaggcgacgcggggtacccgggacttccaggccgcgaaggtttcaaggga
gacaaaggtgaagcaggtcctccaggcccacctggaattgccatcggtcccccaggaccg
cctggagaaaaaggagagcgggggtacccgggcaccccagggttgagaggagagccaggc
cccaaagggttcccaggattacaaggccagccaggtcctccaggcttcccagtaccaggg
caggcgggtgctcctggctttcccggtgaaagaggtgagaaaggtgaccaagggtttcca
ggcacctctttgccgggaccaagcggaagagatgggcaaccgggcccccccgggcttccc
gggccccctggacagccaggccacacgaatggaattgtggaatgtcagcctggaccgcct
ggggatcagggtccccctggaattccggggcagccagggctgacgggcgaggttggagaa
aaaggtcagaaaggagacagctgcctcatctgtgacacagaaggacttcgtgggccccct
gggccgcagggccccccgggagaaataggtttcccaggacagccaggggcgaagggcgac
agaggcttacctggcagagatggtctggagggattgcctggcccgcaaggcacaccgggg
ctgatgggccagccgggagccaagggagagcctggagagatttacttcgacgcacggctc
aaaggagacaaaggagacccaggctttccaggacagcctgggatgccaggcagagcaggg
tctcctgggagagatggccatccgggtctgcccggccccaaaggctccccgggttcagta
ggattgaaaggagagcgtggaccccccnggggagttggattccctggcagtcgaggtgac
atcggccctcctgggcctccagggtttggccctattggccctgttggtgacaaaggacaa
gcgggttttccggggacccctggatccccaggccagccaggtcccaagggtgaagcagga
aaagttgtgcctctacctggtccccctggagcacaaggacttccgggatccccaggcttc
ccagggccacaaggtgaccgaggttttcctggaaccccaggaaggccaggcctcccggga
gagaagggcactgtcggccagcccggaatcggatttccagggcctcctggccccaaaggt
gttgatggcttacctggagatgtgggacctcctgggagtccaggtcgcccgggatttaac
ggcttacctggcaacccgggcgtgcccggccaaaagggagagccgggcattggtctgcca
gggctcaaaggattgccgggtcttcccggcgttcccggcacacctggagaaaaggggaac
atcgggggaccaggtgttcctggagagcatggtgctgtcggccccccaggccttcaggga
atcagaggtgacccaggaccgcctggattacaaggtcccaaaggagctccgggagctcct
ggaattggcccccctggagcgatgggcccccctggaggacagggaccaccaggatcctca
ggccctcccggagtgaaaggagagaagggctttcccggatttccaggcctggacatgcca
ggtcccaaaggagataaagggtcccaagggctgcctggcctgacgggacagtcggggctc
cctggtctccccggacagcagggcacacctggggtgcctgggtttccaggtcccaaggga
gagatgggcgtcatggggaccccggggcagcctggctcaccgggaccagcgggcctgcca
ggattaccaggagagaaaggggaccacggcttcccgggctcctcgggacccaggggagac
cctggcttcaagggggacaaaggagacgtgggtctccctggcatgcctggctccatggat
aaggtggacatgggcagcatgaagggtcagaagggagaccaaggagagaaaggacagact
ggaccaactggtgataaaggatcccggggagaccctggaaccccgggagtacctggaaag
gacgggcaggcggggcatcctgggcagccaggacctaaaggtgacccaggcataggagga
accccgggcgctccaggactccctggacccaagggatcagttggtggaatgggcctgcca
ggaacacctggagaaaaaggtgtgcctgggatccctggcccacagggcgtccctggctta
cccggggagaaaggagccaaaggagagaaagggcaggtgggcctccctggcattggaatt
ccgggccgtcctggggacaagggagatcaaggggtcgcaggctttccgggcagtcctgga
gagaaaggagagaaaggcagcgctggtaccccaggggtccccggctccccgggccccaaa
ggctcgccagggagtgtcggctatccaggaagccccggattgccgggagaaaaaggtgac
aaaggtctcccgggatcggatggcattcccggcatcaaaggagaagcaggtcttcctggg
actcctggccccacgggcccagccggccagaaaggggagcccggcagagacggaatcccg
gggtcggcgggagagaagggtgaagcaggtctgcccggaagaggattcccagggtttcca
ggggccaaaggagagaaaggttcaaagggcgacgtgggtttcccgggacaagccgggagt
ccaggcatccccggatccaaaggagagcaaggattcatgggtcccccggggccacaaggg
cagccgggcttgcctgggaccccgggccatgccgtggaggggcccaaaggagaccggggt
ccgcagggccaacctggcctgccagggcttccgggacctgtggggcctccagggctccct
gggcttgacggactcaaaggtgacaaaggaaacccgggctggccgggggctcctggaact
ccagggcccaagggagagccaggattccaaggcctgcctgggattggtggctcgccaggg
atcacgggctctaagggtgacatggggcctccaggagtgccaggatttcaaggtcagaaa
ggcctccctggcctgcagggagtgaagggggatcaaggtgaccagggcttccctggaagt
aaaggccttcctggccccccgggccccccgggaccctacgatgtcatcaaaggggagcca
gggcttcctggtcctgagggtcccgtaggtctgaaggggctcccggggcctccaggcccc
aaaggacagcaaggtgtgacaggatccgcgggcttacctggaccgcccggtgttcctggt
tttgacggcgcgcctggccagaaaggagagacaggacccttcggccctcctggtccgcga
gggtttcccggcccgccaggccctgatgggttgccaggatccatgggtcccccaggcacc
ccgtctgttgatcacggcttccttgtgaccaggcacagtcaaactacggatgacccacag
tgtcctcctgggaccaaaattctttaccacgggtactccttgctctatgtgcaaggcaac
gaacgggcccacggccaggacttgggcacggctggcagctgcctgcgcaagttcagtacg
atgcccttccttttctgcaacatcaacaatgtgtgtaacttcgcctcccgaaatgactac
tcctactggttgtccacgcctgagcccatgcccatgtccatggcgcccatcgctggggac
aatatcagaccgtttattagcaggtgcgcagtgtgtgaggcgccagccatggtgatggcc
gtgcacagccagaccattcagatcccgcagtgccccagcggctggtcctccctctggatt
ggctattccttcgtgatgcacaccagtgccggtgctgaaggttcgggccaagccctcgcg
tcccccgggtcttgtctggaagagtttaggagcgcgccattcatcgagtgccacggccgt
gggacctgcaactactatgcgaacgcttacagcttctggcttgccaccatcgagagaagc
gagatgttcaagaagcccacgccatccaccttgaaggccggggagctgcgcacacacgtc
agtcgctgccaagtctgtatgagaagaacgtaa
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