Zalophus californianus (California sea lion): 113920173
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Entry
113920173 CDS
T07874
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04611
Platelet activation
zca04820
Cytoskeleton in muscle cells
zca04926
Relaxin signaling pathway
zca04933
AGE-RAGE signaling pathway in diabetic complications
zca04974
Protein digestion and absorption
zca05146
Amoebiasis
zca05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113920173 (COL3A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
113920173 (COL3A1)
09152 Endocrine system
04926 Relaxin signaling pathway
113920173 (COL3A1)
09154 Digestive system
04974 Protein digestion and absorption
113920173 (COL3A1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
113920173 (COL3A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
113920173 (COL3A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
113920173 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113920173 (COL3A1)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113920173 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
113920173
NCBI-ProteinID:
XP_027446258
UniProt:
A0A6J2CVY8
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Position
3:150160746..150199987
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AA seq
1466 aa
AA seq
DB search
MMSFVQKGTWLLLALLHPTVILAQQQAVDGGCSHLGQSYADRDVWKPEPCQICVCDSGSV
LCDDIICDEQELDCPNPEIPFGECCAVCPQPPTAPPRPPNGHGPQGPKGDPGPPGIPGRN
GDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKSGVAGGGIAGYPGPAGPPG
PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPG
ERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMG
PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG
SSGSPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLIGARGPPGPPG
TNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPG
AAGERGVPGFRGPAGANGLPGEKGPSGERGGPGPAGPRGAPGEPGRDGVPGGPGMRGMPG
SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG
GPGPQGPAGKNGETGPQGPPGPTGPGGDKGDPGPPGPQGLQGLPGTSGPPGENGKPGEPG
PKGESGSPGTPGGKGDSGAPGERGPPGAVGPAGPRGGAGPPGPEGGKGAAGPPGPPGSAG
TPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAAGKDGPRGPTGPIGPPGPAGQPGDKG
EGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPG
IAGPPGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGSSGAPG
KDGAPGPPGNNGAPGNPGVSGPKGDAGQPGEKGSPGPQGPPGLPGPLGSAGITGARGLVG
PPGIPGPRGSPGPQGIKGESGKPGLAGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG
LPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPIGPAGKSGDRGETGPAGPSGAPGPAG
SRGPPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRG
PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGG
AVSLGSLGGAEKAGGFAPYYGDEPMDFKINTEEIMTSLKSVNGQLESLISPDGSRKHPAR
NCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCINASPWTVPRKNWWTDSG
AEKKHVWFGESMDGGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMD
HASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAVRLP
IVDIAPYDIGGPDQEFGVDIGPVCFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaggggacctggttacttcttgctctgcttcatcccactgtt
attttggcacaacagcaagctgttgatggaggatgctcccatcttggtcaatcctatgcg
gatagagatgtctggaagccagaaccttgccaaatatgtgtctgtgactcaggatctgtt
ctctgtgatgacataatatgtgacgaacaagaattggactgtcccaacccagaaatccca
tttggagaatgttgtgcagtgtgcccccagcctccaacagctcctcctcgccctcctaat
ggtcatggacctcaaggccctaagggagatccaggcccacctggtattcctgggagaaat
ggtgatcctggtattccaggacaaccaggttcccctgggtctcctggcccccctggaatc
tgtgaatcatgccctactggtcctcagaactattctccccagtttgagtcatatgacgtc
aagtctggagtagcaggaggaggaatcgcgggctatcctgggccagctggtccccctggc
cctcccggtccccctggtacatctggtcatcctggctccccgggttctccaggataccaa
ggtccccccggtgaacctgggcaagctggtccagcaggccctccaggaccccctggtgct
ataggtccatctggtcctgctggaaaagatggagaatcagggagacccggacgacctgga
gagcgaggattgcctggacctccaggtataaaaggtccagctggtatgcctggattccct
ggtatgaaaggacatagaggctttgatggacgaaatggagaaaagggtgatacaggtgct
ccgggattaaagggtgaaaatggcctcccaggtgaaaatggagcccctggacccatgggt
cccagaggagctcctggtgagagaggacggccaggactgccaggagccgcgggggctcga
ggtaatgatggtgctcgcggaagcgatggacaaccaggtcctcctggtccccctggaact
gcaggattccctggttctcctggtgctaagggtgaagttggacctgctggatctcctggt
tcaagcggctcccctggacaaagaggagaacctggacctcagggccatgctggtgctcca
ggtcctcctggccctcctgggagcaatggtagtcctggtggcaaaggtgaaatgggtcct
gctggcattcctggagctcctggactgataggagcccggggtcctcctggaccacctggt
accaatggtgctcctggacagcgaggtggtgcaggtgaacctggtaaaaatggtgccaaa
ggagagccagggccacgcggtgaacgtggggaagccggttctccaggtattccaggacct
aaaggtgaagatggcaaagatggttcgcctggagaacctggtgcaaacggacttccagga
gctgcaggagaaaggggtgtgcctggattccgagggcctgctggagccaacggccttcca
ggagaaaagggtccctctggggaacgtggtggtcctggccccgcagggcccagaggagct
cctggagaacctggccgagatggtgtccctggaggtccaggaatgaggggtatgcccgga
agcccaggagggccaggcagcgatggaaaaccagggcctcccggaagtcaaggagaaagt
ggtcgaccaggtcctccaggcccatctggtccccgaggtcagcctggtgtcatgggtttc
cctggtcctaaaggaaatgatggtgcacctggcaagaatggagaacgaggtggccctgga
ggtcctggccctcagggtcctgctggaaagaatggtgaaactggacctcagggtccccca
ggacctactgggccaggtggtgacaaaggagacccaggaccccctggtccacaaggattg
caaggtttgcctggaaccagtggacctccaggagaaaatggaaaacctggtgaaccaggt
ccaaagggtgaatctggttcacctggaactccaggaggcaagggtgattcgggagccccg
ggcgaacgaggacctccgggagccgtggggcccgcgggaccgagaggtggagccggcccc
cctggtcccgaaggaggaaagggcgctgctggaccccctgggccacctgggtctgctggg
actcctggtctgcaagggatgcctggggaaagaggaggtcctggaggccccgggccaaag
ggtgacaagggcgaaccaggcagcgcaggggcggatggtgctgcagggaaagacgggccg
cggggtcctactggtcccattggcccccctggcccagctggtcagcctggagataagggt
gagggtggtgcccctggacttccgggtatagcaggtcctcgtggtggccctggtgagaga
ggtgaacatgggcctccaggacctgctggcttccctggtgctcctggacagaatggtgaa
cctggtgctaaaggagaaagaggtgctcctggtgagaaaggtgaaggagggccccctggc
atcgcaggaccccctgggggtgccgggcctgctggtccccctgggccccagggcgtcaaa
ggtgaacgcggcagtcctggtggtcctggtgctgctggcttccctggtggtcgtggtctt
cctggtcctcctggtaataatggtaatccaggccccccgggctccagcggtgctccaggc
aaggacggggcccctggtccacctggcaacaatggtgctcccggcaaccctggagtgtct
ggacctaaaggtgatgctggccaacccggtgagaagggatcccctggcccccagggcccc
ccgggacttccaggccccctgggaagtgccgggattaccggagccaggggtctcgtggga
ccaccaggcatccccggtcctaggggaagcccaggcccgcagggcatcaagggtgaaagt
gggaaaccaggacttgctggtcacaatggagaacgtggtcctcctggaccccagggtctt
cctggtctggctggtacagctggtgaacctggaagagatggaaacccaggatcagacggt
cttccaggccgagatggcgctcccggtggcaagggtgatcgtggagaaaatggttcccct
ggtgcccctggtgctcctggtcatccaggcccccctggtcccattggtccagctggaaag
agtggtgacagaggagaaactggccccgctggtccttctggtgctccgggtcctgctggt
tcccgaggtcctcctggtccccaaggtccacgtggtgacaaaggtgaaacaggtgaacgt
ggttctaatggcatcaaaggacatcgaggattccccggtaacccaggtgccccaggttct
ccaggtcccgctggtcaccaaggtgccgttggtagcccaggacctgcaggcccccgagga
cctgttggacccagtgggcccccaggcaaagatggcacgagcggacatccgggtcccatt
ggaccgccagggcctcgagggaacagaggtgaaagaggctctgagggctccccaggccac
ccaggacaaccgggcccgcctggacctcctggtgctcctggtccgtgttgtggtggcggg
gctgtttccctgggttctctcggaggggctgaaaaagctggtggttttgccccatactat
ggagatgaaccgatggatttcaaaatcaacactgaggagattatgacttcactcaaatca
gtcaacggacaactagaaagcctcattagtcctgatgggtcccgtaaacaccctgctcgg
aactgccgagacctgaaattttgccatcctgaactcaagagcggagaatattgggttgat
cctaaccaaggttgcaagctggacgctattaaagtattctgcaatatggaaactggggaa
acgtgcataaatgccagtccttggactgtgccacgtaagaactggtggacagattctggt
gctgagaagaaacatgtttggtttggagaatccatggatggtggttttcagtttagctat
ggcaatcctgaacttcctgaagatgtccttgatgtccagctggccttcctccgacttctc
tccagccgggcctcccagaacatcacgtatcactgcaagaatagcattgcatacatggat
catgccagtgggaatgtaaagaaagccttgaggctgatgggctcaaatgaaggtgaattc
aaggctgaaggaaatagcaaattcacatacacagtcctggaggatggttgcactaaacac
actggggaatggggcaaaacagtcttcgaatatcgaacgcgcaaggccgtgagactacct
attgtagatattgcaccctatgatattggtggtcctgatcaagaatttggtgtggacatt
ggccctgtttgctttttataa
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