Zalophus californianus (California sea lion): 113921454
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Entry
113921454 CDS
T07874
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113921454 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zca03041
]
113921454 (PRPF40B)
Spliceosome [BR:
zca03041
]
Complex A
U1 snRNP components
U1 related factors
113921454 (PRPF40B)
Complex B
113921454 (PRPF40B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
113921454
NCBI-ProteinID:
XP_027447941
UniProt:
A0A6J2CX08
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All DBs
Position
9:complement(63883022..63903730)
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AA seq
905 aa
AA seq
DB search
MAGPREAMEAYFLSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQ
RPPAIPPMPPGIMPPMLPPMGAPPPLTQIPGMVPPMLPGMLMPAVPVTAATAPGADTASS
AVAGTGPPRALWSEHVAPDGRVYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDT
GKPYYYNNQSKESRWTRPKDLDDLEALVKQEAAGKQPQPQILQPQPPQPQPEPPPGPPGP
TPMPLGLLEPEPGGSEDCDTSEAAQPVEQGFLQQPEEGPSSAAGQHQPPQQEEEESKPEP
ERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNA
YKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERD
RKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSF
AQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHE
TGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDIL
KDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRM
RRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETE
CQHLHTKGRKHGRKGKKHHRKRSHSPSGSESEEEELPPPPLRPPKRRRRNPSESGSEPSS
SLDSVESGGAALGGRGSPSSRLLLGSDHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKA
GKESDEKEPEQDKDRELRRAELLNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQ
LDDHQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaccgagagaagcaatggaagcttatttcctatcggttcccgattctggtccc
cggcccccagcagcgcctgcccccttcccaccggggccccccatgatgccaccacccttc
atgccccctccaggaatccccccaccctttcctccgatgggactaccccccatgagtcag
agaccaccagccatccccccgatgccacctggcatcatgcccccaatgctgccaccaatg
ggggcgccaccgccactcacgcagataccaggaatggtaccgcccatgctgccagggatg
ctgatgccagcggtgcctgtcaccgcagcgacggctccgggtgcggacacagccagctct
gctgtggctgggacaggccctccgagggccctgtggagtgagcatgtggcccctgacggg
cgcgtctactactacaatgcagacgacaagcagtccgtgtgggagaagcccagcgtgctc
aagtccaaggcagagttgctgctgtcccagtgtccctggaaagagtacaagtccgacacg
ggcaaaccttactactataacaaccagagtaaggagtctcgctggacccggcccaaggac
ctggatgacctggaggctctagtcaaacaagaggctgcagggaagcagccccagccccag
atactgcagccgcagccacctcagccccagcctgagcccccgcccgggccgcctggcccc
acccccatgcccctgggccttctagagcctgagccaggtgggagtgaagattgcgatacg
tcagaggctgcccagcctgtggagcaggggtttctgcagcagccggaggagggccccagc
agtgctgctggacagcatcagccaccacagcaggaggaagaggaatcaaagccagaacca
gagaggtctggcctcagttggagcaaccgggagaaggcaaagcaggccttcaaggagctg
ctgagggacaaggctgtcccctccaatgcctcgtgggaacaggccatgaagatggtggtc
accgacccccgttacagtgccttgcccaagctgagtgagaaaaagcaggcattcaatgcc
tacaaggcgcagcgggagaaggaggagaaggaggaggcccggctaagggccaaggaggcc
aagcagaccttgcagcatttcctggagcagcacgaacgcatgacctctaccacccgctac
cggcgggccgaacagacctttggggagctggaggtgtgggctgtggtccctgagagggat
cgaaaagaggtttatgatgatgtcctcttcttcctggccaagaaggagaaggaacaggcc
aagcagctccggcgccgcaacatccaggccctgaagagtatcctggatgggatgagtagt
gtcaacttccaaactacatggtcccaggctcagcagtacctcatggataaccccagcttt
gctcaggaccaccagctgcagaatatggacaaggaagatgcactgatctgctttgaggag
catatccgagctttggagagggaggaggaggaggagcgggagcgggcccgccttcgggag
cggcgtcagcaacgcaagaaccgggaggccttccagaccttcctggacgagctgcacgag
acagggcagctgcactctatgtccacctggatggagctgtacccagcggtcagcactgat
gtccgctttgccaacatgctgggccagccgggctccacccctctggacttgttcaagttc
tatgtggaggagttgaaggcacgattccatgatgagaagaagatcattaaggacatcctt
aaggaccggggcttctgcgtggaggtgaacacagcctttgaggacttcgcccacgtcata
agctttgacaagagggcggctgcgctggacgcaggcaacatcaagctgaccttcaatagt
ttgctggagaaagcagaggcgcgggagcgagagcgggagaaggaggaggcgcgaaggatg
cggcgcagggaagctgccttccgaagcatgctgaggcaggccgtgcctgccctggagctg
ggcactgcctgggaagaggtccgtgagcgctttgtgtgcgactcagcctttgagcagatc
accctggagtcggagcggatccggctcttccgggagttcctgcaggtactggagactgaa
tgccagcacctccacaccaaaggccgaaaacacggcagaaagggcaagaagcaccatcga
aagcgttcccactcgccctcaggctctgagtcggaagaagaggagctgcccccgccgcct
ctccgaccccccaagcggagaaggcggaacccctcggagtcaggctctgagccctcttcc
tcccttgattcggttgaaagtgggggtgctgcccttggaggacggggctccccatcttct
cgccttctccttggatcagatcatggccttcggaaagccaagaaaccaaaaaagaaaact
aagaagagaagacacaagtcgaacagtcctgagagcgagacagaccctgaggagaaagct
ggcaaggagagtgatgagaaagagccagaacaggacaaggacagggagctccggcgggca
gaactcctgaaccgctccccaggttttggaatcaagaaggagaagacgggctgggacacg
tcggaaagtgagctgagcgagggtgagctggaaaggcggcggcggacgctcctgcagcag
ctggacgaccaccagtga
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