Zalophus californianus (California sea lion): 113921610
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Entry
113921610 CDS
T07874
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
zca
Zalophus californianus (California sea lion)
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zca03016
]
113921610 (RTCB)
Enzymes [BR:
zca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
113921610 (RTCB)
Transfer RNA biogenesis [BR:
zca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113921610 (RTCB)
Prokaryotic type
tRNA splicing ligases
113921610 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
113921610
NCBI-ProteinID:
XP_027448269
UniProt:
A0A6J2CWW8
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All DBs
Position
9:14815705..14837321
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AA seq
505 aa
AA seq
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MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtagttataatgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctacgtgaatgat
gctctggaaaaattaatgtttgaggaattaaggaatgcctgtcggggtggtggtgtcggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcctttgatatgagtgaccctgaagcagtggtatccccaggtggcgttggatttgacatc
aactgcggtgtgcgcttgctaagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacattcctgtcggggtgggatcaaaaggtgtc
atccccatgagtgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
cgagaaggctatgcctgggctgaggacaaggagcactgtgaggagtatggaaggatgttg
caggccgaccccaacaaggtctctgcgagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgcagctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcctgggccaccaagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagattatagtcaacgaccggcagttggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaaggggatggcagctgctggaaactatgcctgggtcaac
cgctcctccatgaccttcttaacccgtcaggcctttgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgacgtttctcacaatattgccaaagtagagcag
catgtggtggacggaaaggaacggacactgttggttcacaggaagggatccacccgagct
ttcccccctcaccatcccctcattgctgttgattaccaactcactggacaacccgtgctc
attggcggcaccatgggcacttgtagttacgttcttactggcaccgaacagggcatgact
gagacctttggaacaacttgtcatggagcgggccgtgcactgtcccgagcaaaatctcgt
cgtaatttagattttcaggatgtcttggacaaactggcagatatgggaatcgcaatccgc
gttgcctcgcccaaattggttatggaagaggctcccgagtcctataagaacgtgacagat
gtggtgaacacctgccacgatgctggaatcagcaagaaggccattaaactgagaccgatt
gccgtgatcaaaggatag
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