Zalophus californianus (California sea lion): 113921916
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Entry
113921916 CDS
T07874
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04151
PI3K-Akt signaling pathway
zca04510
Focal adhesion
zca04512
ECM-receptor interaction
zca04518
Integrin signaling
zca04974
Protein digestion and absorption
zca05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
113921916 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113921916 (COL2A1)
04518 Integrin signaling
113921916 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113921916 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
113921916 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
113921916 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113921916 (COL2A1)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113921916 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
113921916
NCBI-ProteinID:
XP_027449182
UniProt:
A0A6J2D2T6
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All DBs
Position
9:65589503..65620545
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGAPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGDLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKDSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTLIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcgatgtcacggccaggatgtccagaaggccggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
accgtgctctgtgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcgccacggccagtgggcaacca
ggaccaaagggacagaaaggagaacccggagacatcaaggatattgtaggacctaaagga
cctcctgggcctcagggaccagcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgcccctggacctcgtggcagagatggagagcctgggacccctggcaat
cctggcccccctggtccgcctggcccccctggcccccctggccttggtggaaactttgct
gcccagatggctggaggatttgacgagaaggctggtggcgcccagatgggagtgatgcaa
gggccgatgggccccatgggacctcggggacctccaggccctgctggtgctcccggacct
caaggatttcagggcaaccctggtgaacccggggaacccggtgtctccggtcccatgggt
cctcgtggtcctcctggaccccctggaaaacctggtgatgatggcgaagctggaaagcct
ggaaagtctggtgaaagaggtccccctggccctcagggtgctcgaggcttcccaggaacc
ccaggccttcctggtgtcaagggtcacagaggctacccaggtctagatggtgctaaggga
gaagctggtgctccaggtgtgaagggagagagtggttcaccgggtgagaatggctctcca
ggcccaatgggtccccgcggcctgcctggtgagcgaggacgaactggccctgctggtgct
gcaggagcccggggcaacgacggccaaccaggccccgcaggccctccgggtcccgtgggt
cctgctggtggtcctggcttccctggtgctcccggggccaagggtgaggctggccccact
ggtgctcgcggtcccgaaggtgctcaaggtcctcgcggtgaacctggtactcctgggtcc
cctgggccggccggtgcctctggtaaccccggaaccgatggaattcctggagccaaagga
tctgctggtgctcctggcattgccggtgcccccggcttccctgggccccgtggtccacct
ggccctcaaggtgcaactgggcctctgggcccgaaaggtcagacgggcgagcctggtatt
gctggcttcaaaggtgaacaaggccccaaaggagaacctggccctgctggcccccaagga
gcccctggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcctggtggtgct
gggcccgtcggtccccctggagagagaggtgctcctggcaaccgtggtttcccaggtcag
gatggtctggcaggtccaaagggagcccctggagaacgagggcccagcggccttgctggt
cccaaaggagccaatggtgaccctggccgtcctggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
cccggggaagatggccgccctggtcctccaggtcctcagggtgctcgtgggcagcctggc
gtcatgggtttccctggccccaaaggtgccaacggtgaacctggcaaggccggggagaag
ggactgcctggtgctcctggtctgagaggtcttcctggcaaagatggtgagacaggtgct
gcaggaccccctggacctgctggacctgctggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaaccg
ggtgaccagggtgtccctggtgaagctggagcccccggcctcgtgggtcccaggggcgaa
cgaggtttcccaggagaacgtggctctccgggggcccagggcctccagggtccccgcggc
ctccccggcactcctggcacggacggtcccaaaggcgcatctggcccagctggcccccct
ggggctcagggccctccaggtctgcagggcatgccgggagagaggggagcagcgggcatc
gcggggcccaagggagacaggggtgatgttggcgagaaaggccctgagggagcccctggg
aaggacggtggacgaggcctgactggtcccattggcccccctgggcccgctggtgccaac
ggtgagaagggagaagttgggcctcctggtcctgcaggaactgctggtgctcgcggcgcc
ccaggtgaacgcggagagaccggaccccccgggcccgctggattcgcagggcctcccggt
gctgatggccagccaggtgccaagggcgagcaaggagaggctggccagaaaggtgatgct
ggtgccccaggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccaccggattccctgga
gctgctggccgcgtcggacccccaggctccaatggaaaccctggacccccggggccccct
ggtccttctggaaaagatggtcccaaaggcgctcgaggagacagtggcccccctggccgt
gccggtgaccccggtctccaaggtcctgccggaccccctggcgagaagggggagcctgga
gaggatggaccctctggccctgatggtcccccaggtccccaaggtctggctggtcagagg
ggcatcgtcggtctacctgggcagcgtggtgagagaggatttcctggcctgcctggccca
tcgggtgagcctggcaagcagggagctcctggtgcatctggagaccgaggtcctcccggt
cccgtgggtcctcctggcctgaccggtcctgctggcgaacctggacgagagggaagccct
ggtgctgacggcccccctggcagagatggcgcggctggagtcaagggtgatcgtggtgag
accggtgccgtgggtgcccccggagcccccggggcccctggctctcccggccccgccggc
ccgactggaaagcagggagaccgaggagaagctggtgcacaaggccccatgggtcccgca
ggaccggcaggagcccggggaatcccaggccctcaaggcccccggggtgacaaaggagaa
gctggggaagccggcgagaggggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcctggccctcccggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtcctcctggccccgtcggtccctccggcaaggatggtgctaatgggatc
cctggccccatcggaccccctggtccccgtggacgttcaggcgaaactggccctgcgggc
cctcctggaaaccctggaccccctggccctccaggtccccctggccccggcatcgacatg
tctgcctttgctggcctcggccagagagagaagggccccgaccccctgcagtacatgcgg
gctgaccaggcagctggcgacctgagacagcatgatgccgaggtggacgccacgctcaag
tccctcaacaaccagattgagagcctccgcagccctgagggctcgcgcaagaaccctgct
cgcacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatt
gaccccaaccagggctgcaccttggacgccatgaaggttttctgcaacatggagactggt
gagacctgcgtctaccccaacccagcgaacgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacatatctggtttggggaaaccatcaatggtggcttccacttcagc
tacggtgatgacaacctagctcctaacacggccaacgtccagatgaccttcctacgcctg
ctgtccaccgagggctcccagaatatcacctaccactgcaaggacagtattgcttacctg
gacgaagcagccggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag
atccgggctgagggcaacagccggttcacatacaccgtcctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactctgatcgagtaccggtcgcagaagacctcgcgcctc
cccatcattgacattgcacccatggacataggagggcctgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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integrated database retrieval system
