Zalophus californianus (California sea lion): 113922175
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Entry
113922175 CDS
T07874
Symbol
PAN2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113922175 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113922175 (PAN2)
Enzymes [BR:
zca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113922175 (PAN2)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113922175 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
113922175 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
WDR55
Motif
Other DBs
NCBI-GeneID:
113922175
NCBI-ProteinID:
XP_027449885
UniProt:
A0A6J2D0C1
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All DBs
Position
9:58074117..58088632
Genome browser
AA seq
1202 aa
AA seq
DB search
MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTDGSTLLVGGLQNHILE
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKISLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPIGREE
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEASGKGNLARLIQRWNRFILTQLHQDMQELEVPQAYRGAGGSSFCSSGDSVIGQLFSCE
MENCSLCRCGSETVRASSTLLFTLSYPEGGTSDKTGKNCDFAQVLKRSICLEQNTQAWCD
NCEKYQPTIQTRNIRHLPDILVINCEVNSLKEADFWRMQAEVAFKMAIKKHGGEISKNKE
FALADWKELGSPEGMLMCSSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDGDEIQWGPAR
AEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEP
IDKHEAVQFDMNWKVPAILYYVKRNLNSKYNLNIKNPIEASVLLAEASLARKQRKTHTTF
IPLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNE
GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV
GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDA
RTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVL
AL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgagggtctggaccctggactggcagaatatgccccagccatgcattctgcc
ctggaccctgtcctggatgcccacctgaacccaagtctgctacagaatgtggagctggac
ccggagggggtggccttggaggctcttcctgtccaggagtcagtgcacataatggaaggt
gtctactctgaattgcacagtgtggtggccgaagtgggtgtgcctgtctccgtctcccac
tttgacttgcacgaggagatgctgtgggtgggaagccacgggggccatgctacttcattt
tttggcccagccttggagcgttactcatcctttcaggtcaatggcagtgatgacattcga
cagatccagagcctggaaaatggtattctttttctcaccaagaacaacctcaagtatatg
gctcgtgggggcctcattatatttgattacctgctagatgagagtgaggatatgcacagt
ctcctgctgactgacggcagcactctccttgttggtgggctgcagaaccacatactggag
attgaccttaacactgtccaggagactcagaagtatgcagtcgagacgccgggagtcact
attatgagacagacaaatcgctttttcttctgtggccacacatctggcaagatttccctg
cgagacctccgtacttttaaggtggagcatgagttcgatgctttctcagggagtctgtca
gattttgatgtgcatggcaacctgctggccgcctgtggcttctccagccgcctcaccggc
ctggcctgtgaccgtttcctcaaggtgtatgatcttcgcatgatgcgtgccatcacacca
ctacaagtacacgtggatcctgccttcttgcgcttcatccctacctatacttctcgactt
gctatcatctcccagtcagggcagtgccagttttgtgagcccacaggcctggccaaccca
gcggatatctttcatgtgaatcctgtggggcctctgctaatgacatttgatgtatcggcc
agcaagcaggccctggcctttggggattctgagggctgtgtgcacctctggactgattcc
cctgagccttccttcaacccttactcccgtgagaccgagtttgctctgccctgtctcgtg
gactcgctgcctcctctggactggagccaggacctgctgccactttccctcatccctgtc
ccgctcaccactgacacacttctctctgattggcctgctgccaactccgctccagctccc
aggcgagcaccccctgtggatgcagagattcttcgcaccatgaagaaggtgggcttcatt
ggctacgcgcccaacccccgcacccggttgcgcaatcagattccttaccgactcaaggag
tcagacagtgaatttgacagcttcagccaggtcactgagtcaccgataggacgggaagag
gagccacatctgcacatggtctcgaagaagtaccgcaaggtaaccatcaaatactccaag
ctagggttggaggactttgacttcaaacactacaataagaccctgtttgctggattagag
ccccacatccccaatgcctactgcaactgcatgatccaggtgctgtacttcctggagcct
gttcgctgtctaatccagaaccatctttgccagaaggagttctgcctggcttgtgagctg
ggcttcctcttccacatgttggatctctctcggggtgacccttgtcagggcagtaatttt
cttcgggcattccgcaccatccctgaggcgtcagcccttggtctgatcctggctgactca
gatgaggcctcaggcaaaggcaatctggccaggcttattcagaggtggaatcgcttcatt
ctcactcagctgcatcaggacatgcaggagctggaagtaccccaggcttatcgaggtgct
ggaggcagcagcttttgctcatcgggggactcagtcatcgggcagctgttcagctgtgag
atggagaactgcagcctctgccgctgtggcagtgagaccgtgcgggcctcatccaccctg
ctcttcacgctctcgtaccccgagggaggcaccagcgataaaaccgggaagaactgtgac
tttgctcaggtgctgaagcgaagcatctgcctggagcagaatacacaggcctggtgtgac
aactgtgaaaagtaccagcccacgattcagacccgcaacatccgccatctgccagatatt
ctcgtcatcaactgtgaggtgaacagcttgaaagaagctgatttctggagaatgcaggct
gaggttgccttcaagatggcaataaagaagcatggtggggaaatctccaagaacaaggaa
tttgctttggctgattggaaagaactagggagtccagagggtatgctgatgtgttcctcc
attgaggagttgaagaatgtctggcttcctttctccattcgcatgaagatgaccaagaac
aaggggctggatgtttgcaattggactgatggggatgagatacagtggggcccagccagg
gcagaggaggagcatggtgtctatgtgtatgacctgatggctactgtggtacacatcctg
gactcacgcacagggggcagcctggtggctcacatcaaagttggagagacctaccaccag
cgtaaggagggtgttacccaccagcagtggtatctctttaatgactttcttattgaacct
attgataagcacgaagctgtgcagtttgacatgaattggaaagtgcctgctatcctatat
tacgtcaaaaggaatcttaattccaaatacaacctgaacatcaagaaccctattgaggca
agtgtcctgctggctgaagcctcactagcacggaagcagcggaaaacacatactaccttt
attccactgatgctgaatgagatgccacaggttggggacctggtgggcctggatgctgag
tttgtcacccttaatgaggaggaagcagagttacgcagtgatggcactaagtctaccatc
aaaccaagccagatgtcagtagcaaggatcacctgtgttcggggccagggacccaatgag
ggcattcccttcattgatgactacatctctacccaggagcaggtggtggattacttgact
cagtattcggggataaagccaggagacctagatgccaagatttcctctaagcacctcaca
actctcaagtctacctacttaaagcttcgttttcttatagacattggagtcaagtttgtg
ggtcatggtctgcagaaggacttccgggtcatcaacctcatggtgcccaaggaccaagtc
cttgacactgtctatctctttcacatgccccgaaaacgaatgatttccctgcgattcctt
gcttggtactttctagacttaaagattcaaggggaaacccatgacagtattgaggatgcc
cgcacagcccttcagctctaccgaaaatatctggagctaagcaaaaatggcaccgagcct
gagtccttccacaaagtgctcaagggtctttatgagaagggccgaaagatggactggaag
gtgcctgaacctgagggccagacaagtcccaagaatgcagctgtcttctcttcagtgttg
gcgctctga
DBGET
integrated database retrieval system
