Zalophus californianus (California sea lion): 113924758
Help
Entry
113924758 CDS
T07874
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca05016
Huntington disease
zca05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
113924758 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
113924758 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113924758 (HTT)
04131 Membrane trafficking [BR:
zca04131
]
113924758 (HTT)
03029 Mitochondrial biogenesis [BR:
zca03029
]
113924758 (HTT)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113924758 (HTT)
Membrane trafficking [BR:
zca04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
113924758 (HTT)
Mitochondrial biogenesis [BR:
zca03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
113924758 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
113924758
NCBI-ProteinID:
XP_027454753
UniProt:
A0A6J2DKF6
LinkDB
All DBs
Position
2:2115689..2252131
Genome browser
AA seq
3130 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQQPPPPPQPVQALPQAQPPLPQPQPPPPPPPPPP
PGPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLC
SDDAESDVRMVADECLNRVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAH
LVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAF
IANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEGEHSTLLILGVL
LTLRYLVPLLQQQVKDTSLKGSFGVTRKELEVSPSTEQLIQVYELTLHYTQHQDHNAVTG
ALELLQQLFRTPPPELLQALSTPGGGPLTAAHRQPGCRSRSGSIVELLAGGGSSCSPVLS
RKQKGKVLFGEAAALEDDSESRSEGSSPAFTASVKGEIGGELAASSGVSTPGSASSATDS
VGHDIITEQPRSQHTLQPDSVDLTGCDLASAATDGDEEDILSHSSSQISAVPSDPAMDLN
DGTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADSQHSGMQIGQPPDEDEEATGIL
PDEDADAFRSSSVALRQAHLLKSMGHSRQPSDSSIDKFVSRDEAAEPGDQENKPCRIKGD
VGQSTDDESVPLVHCVRLLSASFLLTGEKNVLVPDRDVRVSVKALALSCVGAAVALHPES
FFSKLYKVPLDTMEYPEEQYVSDILNYIDHGDPQVRGATAVLCGTLIASILSRSRFQVGD
WMSTIRTLTGNTFSLADCIPLLQKTLKDESSVTCKLACTAVRHCVMSLCSSSYSELGLQL
ITDMLTLRDSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLKLQERVLH
DVVIYLLGDEDPRVRHVAAAALMRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHET
QPPSHFSVSTITRIYRGYNLLPSMTDVTVENNLSRVIAAVSRELVMSTTRALTFGCCEAL
CLLSTTFPVCIWSLGWHCGVPPLSTSDESRKSCTVGMATMVLTLLSSAWFPLDLSAHQDA
LVLAGNLLAASAPKSLRSSWTSEEEANPAAAKQEEVWPALGDRTLVPMVEQLFSHLLKVI
NICAHVLDDVAPGPAMKAALPSLTNPPSLSPIRRKGKEKEPGEPASVPLSPKKGSEASPA
SRQSDAPGPVTANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRS
ALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFD
GLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDTSG
WFDVLQKVSTQLKTNLTSATKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVRLQRQVL
DLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERY
HSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKE
VVVSMLLRLIQYHQVLEMFILVLQQCHKESEDKWKRLSRQVADVILPMLAKQQMHIDSHE
ALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMASVSTVQLWISGILAILRVLISQSTE
DIVLSRIQELSFSPYLISCPIIDRLRDGDSTSTPEEHNEGRQIKSLPEETFSRFLLQLVG
ILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGTFRRITAAASRLFAADRAD
GTFYGLERLNARVRTMLPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPRRRSLSSTKSL
SPQVPGEEDPDAACRLGVCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLINL
SHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLT
LYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQSSTAQLPVEELSRIQEYLQSSGLAH
RHQRLYSLLDRLRLATAPGSRGPSPPVTSHPLDGDGPLALETVIPDKDWYLRLVKSQCWT
RSDSALLEGAELVNRIPPSDMSAFMMNSEFNLSLLAPCLGLGVREISGGQRSPLFEAARL
ATLDRVSGLVRQLPATHRVLQPFLPVEPTAYWNKLNDLFGDAVLYRSLTTLARALAQYLL
LFSKLPSHLHLPPEKERDTVKFVVMTLEALAWHLIHEQIPLSLDLQAGLDCCCLALQLPS
LWSVLSSPEMVTHACSLIHCVRFVLEAVVVQPGDQLLSPERRMNTPKASREDEVDSNTQN
PAYITAACGMVAEMVESLPSVLALGHKRNSNTPAFLTSVLRNIIISLARLPLVNSYTRVP
PLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINALGWTSRTQFEETWATLL
GVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPR
NKPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVPSLSPATTGALI
SHDKLLLQINPERELGNMSYKLGQVSIHSVWLGNGITPLREEEWEEEEEEEADVPAPASP
PTSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSGSARRTPIILISEVVRSLLVVSDLFT
ERTQFEMMYLTLTELRRVHPAEDEILIQYLVPATCKAAAVLGMDKAVAEPVSRLLESTLR
SSHLPSKVGALHGALYVLECDLLDETAKQLVPVISDYLLSNLKGVAHCVNIHSQQHVLVM
CATAFYLIENYPLDVGPEFSASIIQMCGVMLSGSEEATPSIIYHCVLRGLERLLLCEQLC
RLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPSPAAPDSESVI
VAMERVSVLFDRVRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFM
ATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRTPVAMAVWSLSCFFISASTSPWVSAV
LPHVISRMGKLEQVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAAPGNPYHRLLTC
LRNVHKVATC
NT seq
9393 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctagaaaagctgatgaaggccttcgaatccctcaagtcctttcagcagcaa
cagcagcagcagcagcagcagcagcctccgccgccgcctcagcctgttcaggcgctgccg
caggcgcagccgccgctgcctcagccgcagccgccgccgcccccgccgcccccgccgccc
cccggcccggccgtggccgaggagccactgcatcgaccaaagaaagaactctcagccacc
aagaaagaccgcgtgaaccattgtctgacaatatgtgaaaacatagtggcacagtcactc
agaaattctccagaatttcagaaacttctgggcatcgctatggaactttttctgctgtgc
agtgatgatgcagagtcggatgtccggatggtggctgacgagtgcctcaacagagtcata
aaggccctgatggactccaatcttccgaggctacagttagaactctataaggaaatcaaa
aagaacggtgctccccggagcctgcgtgccgccttgtggaggtttgctgaactggctcac
ctggtccggcctcagaagtgcaggccttacttggtaaaccttttgccttgcctgactcga
ataagcaagagacctgaggaatctgttcaggagaccttggctgcagctgtacccaaaatt
atggcttcttttggcaattttgcaaatgacaatgaaattaaggttctattaaaggctttc
atagcaaatctgaagtcaagctccccgaccattcggcggacggcggctggctcagcggtg
agcatctgccagcactcgagaaggacgcagtatttttatagctggctactaaatgtgctc
ttaggtttgctggtccctgttgagggtgaacattctaccctcctgattcttggagtgctg
ctcacactgagatacctggtgcccttgctgcaacagcaggtcaaggacacgagcctgaaa
ggcagctttggggtgacacggaaagaactggaagtctccccctcgacagagcagcttatc
caggtttatgagctgaccttgcactacactcagcaccaagaccacaatgctgtgaccggt
gcgctggagctcctgcagcagctgttcaggacgccgccacccgagctcctgcaggccctg
agcacgccgggcggcgggccgctcactgccgcacaccgccagcccggctgccggagccgt
agcggcagcatcgtggagctgctagctggagggggttcttcatgcagccctgtcctttca
agaaaacaaaaagggaaagtgctcttcggagaagcagcggccttggaggatgactccgag
tccaggtcggagggcagcagccccgccttcacagcctcagtcaagggtgagattggtggc
gagctggctgcctcttccggggtctccactcctggctctgccagttcagccaccgactct
gtgggccacgacatcatcaccgagcagccccggtcacagcacacgctgcagccagactcg
gtggatctgaccggctgtgacctggcgagtgctgccaccgatggggatgaggaggacatc
ctgagccacagctccagccagatcagtgccgtcccgtccgacccggccatggacctgaac
gatggcacccaggcctcctccccagtcagcgacagctcccagaccaccaccgaggggcct
gattcggctgtgaccccttcagacagttctgaaattgtgttagatggtgccgacagccag
cattcggggatgcagatcggacagccacccgacgaggatgaggaagccacgggcattctt
ccggatgaagacgcggatgctttccgaagctcttcagttgccctgcggcaagcacattta
ttgaaaagtatgggccacagcaggcagccctctgacagcagtatagataaatttgtctcc
agagatgaagctgccgaaccaggagatcaagaaaacaagccttgccggatcaaaggtgac
gtaggacagtctaccgacgacgaatctgttcctcttgtccattgtgtccgccttctctct
gcttcatttttgctgactggggaaaaaaatgtgctggttccggacagggacgtgagggtc
agcgtgaaggcgctggcgctcagctgtgtgggggcagccgtggcccttcatcctgagtct
ttcttcagcaaactttataaagtacctcttgacaccatggagtaccctgaggagcagtac
gtgtcagacatcctgaactacatcgaccacggagacccccaggtcagaggagccacggcc
gttctctgtgggaccctcattgcctccatcctcagcagatcccgcttccaagtgggagac
tggatgagcaccatcaggaccctgacaggaaatacattttctctggcggactgcattcct
ttgctgcagaaaactctgaaggatgaatcttctgtgacttgcaagctggcttgtacagct
gtgaggcactgtgtcatgagtctctgcagcagtagctatagtgaattgggattacagctg
atcaccgacatgctgaccttgagggatagttcctactggctggtgaggacagaacttttg
gaaactcttgcagagattgactttaggttggtgagctttttggaggcaaaagcagaaaac
ctgcacagaggggcccatcattacacagggcttttaaaactgcaagaacgagtgttgcat
gacgtcgtcatctatctgctcggggacgaggaccccagggtgcggcacgttgccgcagca
gctttgatgaggcttgtcccaaagctattctataagtgcgaccaagggcaagctgacccc
gtcgtggctgtggcgagggatcaaagcagtgtttacctgaagctcctcatgcatgagacg
cagcctccctctcacttctccgtcagcaccatcaccagaatatacagaggctataactta
ctgccgagcatgacggacgtcactgtggaaaacaacctctccagagtcatcgcggcagtt
tcccgcgaactggtcatgtccaccacacgtgcactcacatttggatgctgcgaagctctg
tgtctcctttcaaccacctttcccgtctgcatttggagtttaggttggcattgtggggtg
cccccgctgagcacctctgatgagtcgagaaagagctgtactgttggcatggccacaatg
gtcctcaccttgctctcgtcagcctggttcccgctggatctctcagcccatcaggatgct
ttggttttagccggaaacttgcttgcagccagtgcccccaaatctctgagaagttcctgg
acctccgaagaagaggccaacccagcagctgccaagcaggaagaggtctggccagctctg
ggtgaccggaccctggtgcccatggtggaacagctcttctcccacctgctgaaggtgatt
aatatctgtgctcacgtcttggacgatgtggctccgggaccagcaatgaaggcagccttg
ccgtctctgacaaaccctccttctctgagtcccatccgacgaaagggaaaggagaaagaa
cccggagaaccggcctctgtgcccttgagccccaagaagggcagcgaagccagtccagcc
tctcgacaatctgatgccccagggcctgttacagcaaataagtcttcttcgctggggagt
ttctgtcacctgccttcgtacctcaaattgcatgacgtcctgaaagctactcacgccaac
tacaaggtaaccttggatcttcagaacagcactgaaaagtttgggggctttctgcgctct
gccttggatgttctctctcagatcctagagctggcgacgctgcaggacatcgggaagtgt
gtcgaggagatcctagggtatctgaaatcctgtttcagccgagaaccggtgatggcaacc
gtttgcgttcagcagctgttgaagactctctttgggacaaacttggcctcccagtttgat
ggcttatcctccaaccccagcaagtctcaaggccgagcacagcgtctgggctcctccagt
gtgaggccgggcttgtaccactactgcttcatggctccgtacacccacttcacccaggcc
ttagccgacgccagcctgaggaacatggtgcaggcggagcaggaccacgacacttcaggg
tggtttgacgtgcttcagaaggtgtctacccagctgaagaccaacctcacgagcgccaca
aagaaccgcgcggataagaatgctattcataatcacatccgcttgttcgagcctctggtt
attaaagctttgaagcagtacaccaccaccacgtccgtgcggctgcagaggcaggttctg
gacttgctggcgcagctggtgcagttacgggtcaactactgtcttctggactcggaccag
gtgtttattggatttgtgctgaagcagtttgaatacattgaagtaggccagttcagggaa
tcagaggcaattattccaaacatctttttcttcctggtattactatcttacgaacgctat
cattcaaaacagatcattggaattcctaaaatcattcagctctgtgatggcatcatggcc
agtgggaggaaggctgtgacacatgccataccagctctgcagccaatagtccatgacctc
tttgtactgagaggaacaaataaagccgacgcaggaaaagagcttgaaacccaaaaagag
gtggtggtgtcgatgctgctgagactcatccagtaccatcaggtgttggagatgttcatc
ctggtcctgcagcagtgccacaaggagagtgaagacaagtggaagcggctgtctcggcag
gtagccgacgtcatcctcccgatgttagccaagcagcagatgcacattgattctcatgaa
gcccttggagtgttaaatactttatttgagattctggccccttcctccctccgtcccgtg
gacatgcttttacggagtatgtttgtcactccagatacaatggcatctgtgagcactgtg
caactgtggatctcaggaatcctagccattttgagggttctaatttcccagtcaactgaa
gatattgttctttctcgtattcaggagctctccttctccccatatttaatctcctgtcca
ataattgataggttaagagatggggacagtacttcaacaccagaagaacacaacgaaggg
agacaaatcaagagtttgccagaggaaacattttcaaggtttctactacagctagttggc
attcttttggaggatattgttacaaaacagctaaaagtggaaatgagtgaacagcaacat
actttctattgtcaagaactaggcacgctgctaatgtgtctgatccacatcttcaagtct
ggaacgttccggagaatcacagcagctgcctcgaggctcttcgcggcggaccgcgccgat
ggcactttctacggcctggagaggctgaatgcgcgcgtgcgcaccatgctgcccacgcac
ccggcactcgtgctgctctggtgccagatcctgctgctcgtcagccacactgactaccgc
tggtgggcagaggtgcagcagacccccaggagacgcagtctgtccagtacgaagtcactc
agcccccaggtgcctggagaggaggaccctgatgcagcctgcaggcttggggtgtgcaac
agagaaatagtgcgaaggggagcgctcattctcttctgcgattatgtctgtcagaaccta
cacgattcagagcacctaacgtggctcattgtgaatcacatccaggacctgatcaatctg
tcccacgagccccccgtgcaggattttatcagtgctgttcatcggaactccgctgccagt
ggcctcttcatccaggcgattcagtctcgttgtgaaaacctttcaacccctaccaccctg
aagaagacgcttcagtgcttagaagggatccacctcagccagtcgggcgccgtgttaaca
ctgtatgtggacaagcttttgtgcactccgttccgtgtgctggctcgcatggttgacact
ctagcctgtcgccgggtggaaatgcttctggctgcaaatttacagagcagcacggctcag
ctgccagtggaggagctcagcaggatccaggaataccttcagagcagcggcctggctcac
agacaccagaggctctactccctgctggacaggcttcgtctcgccaccgcacccggctca
cgtggcccttctcctccagtcacgtcccacccgctggacggggatgggcccctcgcactg
gagaccgtgattccagacaaagactggtacctacgtctagtcaaatcccagtgctggact
aggtcggattctgcgctgctggaaggggcagaactggtgaatcggattcctcccagtgac
atgagtgcattcatgatgaactcggaattcaacttaagcctgctcgccccatgcttgggc
ctgggtgtgcgcgaaatctctggaggccagaggagccccctttttgaggcagcccgcctg
gccactctggaccgtgtgagcggcctggtccggcagctccctgccacccaccgcgttctc
cagccgttcctgcctgtggagcccaccgcctactggaacaagttgaatgatctatttggg
gatgctgtgttgtaccggtccttgaccactctggcccgggccctagcccagtacctgctg
ctgttctccaaactgcccagccatttgcacctccctcctgagaaggagagggacactgtg
aaatttgtggtcatgaccctcgaggccctggcgtggcatttgatccatgagcagatcccg
ctgagtctggacctgcaggccggcctggactgctgttgcctggccctgcagctgcccagc
ctctggagtgtgctgtcctccccagagatggtgacccatgcctgctctctcattcactgt
gtccgcttcgtcctggaagctgttgtggtgcagcctggggatcagcttcttagtccagaa
agaaggatgaacaccccaaaggcttccagagaggatgaagtagattcaaacacacaaaac
ccggcatatatcactgcagcctgtgggatggtggcagaaatggtggagtctttgccatca
gtgttggccttggggcataaaaggaatagcaacaccccagcgtttctcacgtcagtgctc
aggaacatcatcatcagcctggctcgcttacccctcgtcaacagctacacgcgtgtcccc
cccctggtttggaagctcggatggtcgcccaagccaggaggtgactttggcacagccttc
cctgagatcccggtggagttccttcaggagaaggaagtctttaaagagttcatctaccgc
atcaatgcactagggtggaccagccgcacccagtttgaggaaacgtgggccaccctcctt
ggcgtcctggtgactcagcccctcgtgatggagcaggaggagagcccaccggaagaagac
acggagaggacccagatcaatgtcctggccgtgcaggccatcacctcactggtgctgagc
gcaatgaccgtgcctgtggctggcaacccagccgtgagctgcttggagcagcagccccga
aacaagcccctcaaagccctcgacaccaggtttgggaggaagctgagcattatccgagga
attgtagagcaggaaatccaagcaatggtttcaaagagagagaacatcgccacccatcac
ttataccaggcgtgggaccccgtcccttctctgtctcctgctacgacaggtgccctcatc
agccacgacaagcttctgctgcagatcaaccccgagcgggagctggggaacatgagctat
aagcttggccaggtgtccattcactccgtgtggctggggaacggcatcacgcccctgcgc
gaggaggagtgggaggaggaggaggaggaggaggccgacgtccccgcccccgcgtcacca
cccacgtcgcccgtcaactccaggaagcaccgggctggggtcgatatccactcctgttcc
cagtttttgctcgaactgtacagtcgctggatcctgccgtcagggtcggcccgaaggacg
cccatcatcctgatcagcgaagtggttcgatctcttctagtagtctcagacttgttcacc
gaacgcacccagtttgagatgatgtatctgacgctgacagagctgcggagggtgcaccct
gcagaagacgagattctcattcagtacctggtgcctgccacctgcaaggcggctgccgtc
ctgggaatggataaggctgtggcagagcccgtcagccggctactggagagtaccctgagg
agcagccacctgcccagcaaggtcggggccctgcacggcgctctctacgtgcttgagtgt
gacctcctggatgagacggcgaagcagcttgtcccagtcatcagtgactacctcctgtcc
aacctcaaaggggtggcccactgcgtgaacattcatagccagcagcatgtgctggtgatg
tgtgccaccgccttctacctgatcgagaactatcccctggatgtgggcccagagttctct
gcgtcaatcatacagatgtgtggggtgatgctgtccggaagtgaggaagctaccccgtcc
atcatctaccactgtgtcctgcggggcctggaacgcctcctgctgtgtgaacagctgtgc
cgtctggatgcagagtccctggtcaagctgagtgtggacagagtgaatgtgcacagccca
catcgggccatggccgccttgggcctgatgctcacctgcatgtatacagggaaggagaaa
atcagtccgggcagaacctcagaccccagccctgccgccccggacagcgagtcagtgatt
gtcgcgatggagcgtgtatctgttctttttgacagggtcaggaaaggcttcccctgtgaa
gccagagtggtggcacggatccttcctcagtttttagacgacttcttcccaccccaggat
gtcatgaacaaagtcattggagaatttctctccaaccagcagccataccctcagttcatg
gccaccgtcgtgtataaggttttccagactctgcacaccaccgggcagtcatccatggtc
cgggactgggtcatgctgtccctctccaacttcacccagaggaccccggtggctatggct
gtgtggagcctctcctgcttcttcatcagtgcttccaccagcccatgggtctcggctgtc
cttccccacgtcatcagccggatgggcaagctggagcaggtggacgtgaacctcttctgc
ctggtggccacggacttttacagacaccagatagaagaggagctggaccgccgggccttc
cagtccgtgtttgaggtggtcgcggcaccaggaaacccatatcatcgattgctgacttgt
ttgcggaacgtccacaaggtcgccacgtgctga
DBGET
integrated database retrieval system
