Zalophus californianus (California sea lion): 113927610
Help
Entry
113927610 CDS
T07874
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04820
Cytoskeleton in muscle cells
zca04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113927610 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
113927610 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113927610 (COL11A2)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113927610 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113927610
NCBI-ProteinID:
XP_027459368
UniProt:
A0A6J2DZF6
LinkDB
All DBs
Position
7:116952708..116982484
Genome browser
AA seq
1736 aa
AA seq
DB search
MERCRRCHRLLLLVPLVLGLSAVPARAGARPVDVLRALRFPSLPDGVRRARGICLADVAY
RVSRPAQLSAPTHQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVQQLGLELGRPF
RFLYEDQTGRPRPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAH
PLLDTHGVIIFGARILDEEVFEGDIQELVIVPGVQAAYQSCEQKELECEGAWRERPQKQQ
SHRTQRSPKQQPSRLHRPQNQEPQRQPTESFYSDYETPYYDARTSGKTPNYQDPSPGEEE
GILESSPLPPPEEEQTDLQVPSTADRFLTEEYGEGGTDPPAGPYDYTYGYGDDYREETEL
GPALSAETAPSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDIGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGSGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGAGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPAGDD
GPKGNPGPVGFPGDPGPPGEGGPRGQDGVKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGSPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDVGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSA
GQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGIQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSAGGLEEIFGSLDSLREEIEQMRRP
TGTQNSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDIT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVAQDGPLKLRGANEDELSLETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcgatgcagacgctgccatcgcctcctcctgctggtaccgctggtgctggggttg
agcgcggtccccgccagggcaggtgcacgccccgtggatgtgctccgggccctgaggttc
ccctcccttcctgatggtgtccggagggcgagaggcatctgtctggctgatgtggcctac
cgagtatcccgacccgcgcagctcagtgcacccacccaccagctcttcccaggaggtttt
cccaaagatttctcattgctgactgctgtccggacccgccctggcctccaggctcccctc
ctgactctctacagtgcccagggtgtccaacagctgggcctggagcttggccgacccttc
cgcttcctgtatgaggaccagactggacggcctcgacccccggctcagccagtcttccga
ggcctcagcctagcagatggcaagtggcaccgtgttgctgtggctgtgaagggccagtct
gtcaccctcatagttgactgcaagaagcgggtcacccggcctctcccccgaagtgctcat
ccactgttggacacccacggagtgattatctttggtgcccgtatcctggatgaagaagtg
tttgagggtgacatccaggagcttgtcattgtcccaggggtgcaagctgcctaccaatcc
tgtgaacagaaggagctggagtgtgaaggagcttggagggagagacctcagaaacaacag
tctcacaggacccagagatctccaaagcagcagccatcaagacttcataggccacaaaac
caggaacctcagcgacagcccactgagtctttctactctgactacgagaccccctattat
gatgcgaggacttcagggaagacccctaattatcaggacccctccccaggtgaagaggaa
ggaatcctggaatcaagccccttgccaccccctgaggaggagcagacagatctccaggtc
ccctccacagccgacaggttcctgacagaggaatatggggagggtggcacagacccccca
gcagggccctacgattacacctatggctatggggacgattatcgtgaggagacggagctt
ggccctgccctgtctgcggagacagccccctctggagccgctgcccgtggaccccggggg
ctgaagggagagaagggggagcctgcggtgctggaacctggtatgctagtggaggggcct
cctggcccagaaggccctgcggggttgattggtccccctggcatccagggcaacccaggc
ccagttggagaccctggcgagaggggcccccctggccgagcagggctccctggatcagat
ggggcccctggccctcctggcacatctctcatgctcccattccggtttggcagtggtggg
ggtgacaagggccctgtggtggcagcccaagaggctcaggcccaggcgattctgcagcag
gcacgtctggcgctccggggaccccctggccccatgggatacacaggccgccctggaccc
ttgggacaacctgggagccctggcctgaaaggagaatcaggagacctaggacctcagggc
cccagaggacctcaaggcctcacaggccctcctggcaaggctgggcgaaggggccgagcg
ggtgctgatggagcccgagggatgcctggagaacctggagtgaagggtgaccgaggtttt
gatggactcccagggctacctggggagaagggacaccggggtgatattggtgcccagggc
cttcctggcccccccggtgaggatggagagcggggagatgatggggagattgggcctcgg
ggactgcctggagagtcgggaccgcgaggtctccttggccccaaaggcccacctggtatt
cctggacccccgggagtccgaggcatggatggtccccatggtcccaaagggagcttggga
ccccagggagagccaggacctcctggacaacagggcactcctggaacccagggtctcccc
gggccccagggtgccattgggcctcatggagagaagggtcctcgagggaaaccagggctc
cctggcatgcctggctcagatggaccgccgggtcaccctggaaaggaaggtcctcctgga
accaaaggaaaccagggtccatctggacctcagggtcctctaggatacccgggacctcga
ggtgtcaagggtgtggatggaattcgcggtctgaagggtcataagggtgaaaagggcgag
gatggctttcctgggttcaaaggcgacatgggcgtgaagggtgacaggggagaggttgga
gttcctggatccaggggagaagatggtcccgaggggccgaagggacgcactggacccact
ggagaccctgggccccccgggctcatgggcgaaaagggcaagctgggtgttcctggtctg
cctggctaccctggacgccagggtcccaaggggtccctgggatttcctggttttcctggt
gccagtggagagaagggagcccggggcctgtcggggaagtcagggcctcggggagagcgg
ggccccacgggtccccggggtcagcggggaccccgaggtgccactggaaagtctggcgct
aagggaacatcaggtggtgatggcccccatgggcctcccggagaaaggggtctccctgga
cctcaaggccccaatggatttcctggccccaaaggacctccgggtccccctgggaaggat
gggctgccaggacacccaggccagagaggagaagtgggtttccaagggaagactggcccc
cctggccctccaggggtggtgggacctcagggagcagcaggagaaacagggcccatgggg
gagagaggtcaccccggccccccaggtcccccgggagagcagggactgactggaacagct
ggaaaagaaggaacaaagggtgaccctggtcccccaggggctccagggaaggatggacct
gctggtctgaggggcttcccaggggagagaggcctccccggcactgctggtggatccggt
ttgaagggaaacgaaggtccggccggtccccctggccctgcaggctcccctggggagcga
ggtgcagcaggatctgggggacccattggccccccggggcgcccaggcccacagggtccc
cctggagccgcaggagagaaaggtgtcccgggtgagaagggccccattggtccaactggc
cgagatggggtgcagggtcctgtggggctccctggtcctgctggacccccgggtgtggca
ggagaggatggagacaagggtgaggtaggagaccccggacagaagggcactaaagggaac
aagggtgaacatggccctcctggaccccctggaccccttggtcctgtggggcaacctgga
gcagcgggagcagatggggagcccggagctcggggaccccagggacactttggagccaaa
ggtgatgaaggaacgagaggattcaatgggcccccaggacccattggcctgcagggtttg
ccaggcccgtcgggtgagaagggagaaacaggagatgtggggcctatgggaccacccggc
cccccaggacctcgaggcccagctggacccaatggagctgatggtccgcaaggtcccccg
ggaggggctgggaacctgggtccccctggagagaagggggagccaggagagtcaggatct
ccaggggtccagggcgagccaggtgtcaagggcccacgcggggagcgtggggagaaagga
gagtcggggcagccaggagaggcaggaccaccagggcctaaaggccccgccggggatgat
ggccccaaagggaaccctggtcctgttggttttcctggtgatcctggccctcctggagaa
ggtggccctcggggccaggacggtgtaaagggtgaccgaggagaggatggcgagccagga
cagcctggatccccgggtcccactggggagaatggaccccctggaccacttggaaagcgg
ggtcctgccggctcgcctggtcctgaggggcggcaaggagagaagggagccaagggggat
cctggtgctgtgggtgccccagggaagacaggccctgtgggtccagcaggcccagcaggg
aaacctggtcctgatggtctaaggggactcccgggctcagtgggtcagcaaggccgtcct
ggggccacaggccaggcggggcctccaggtcctgtgggacccccagggcttcctggcctc
cgaggtgatgttggagccaagggcgagaagggtcacccaggtctcatcggactgatcggg
ccccctggggagcagggagagaagggtgatcggggacttcctggccctcagggctctgct
ggacagaagggagagacgggtatcccgggagcatccggtcctatcggtcctggagggcct
cctggcctccccggacctgctggccccaaaggagccaaaggagccacaggcccagctgga
cccaagggagagaagggcatccagggtcctccaggacacccgggccccccgggcgaggtg
atccagcccctgcccatccagatgcccaagaagactcggcgctcggtggacggaagccgc
cttatgcaggaggatgaggccataccgactgggggtgctccgggcagtgctggggggctg
gaggagatctttggctcccttgactccctgcgggaggagattgagcagatgaggcggccg
acagggacccagaacagccccgctcgcacctgccaggacctgaagctctgccacccggag
ctgcctgacggagaatactgggtcgaccccaaccagggctgtgctcgggatgccttccgg
gttttctgcaactttacagcggggggggaaacatgtgtgacccccagggatgacatcacg
caattctcttacgtggactcagaaggctccccagtcggtgtggtccagctcaccttcctg
cggctgctcagcgtctcagcccaccaggatgtctcctatccctgctctggggtggcccaa
gatggtcccctgaagctccggggggccaatgaggatgagctgagcctggagaccagccct
tatgtcaaggaattcagagacggctgtcagacacagcaaggccggacggtgctggaggtg
cggacacctgtgctggagcagctcccagtgctggacgcctccttctcagacctgggggcc
ccccctcggcggggaggggtgctgctggggcctgtctgcttcatgggctag
DBGET
integrated database retrieval system
