Zalophus californianus (California sea lion): 113928808
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Entry
113928808 CDS
T07874
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
zca
Zalophus californianus (California sea lion)
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zca03021
]
113928808 (CHD1)
03036 Chromosome and associated proteins [BR:
zca03036
]
113928808 (CHD1)
Transcription machinery [BR:
zca03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113928808 (CHD1)
Chromosome and associated proteins [BR:
zca03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
113928808 (CHD1)
SLIK complex
113928808 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
113928808
NCBI-ProteinID:
XP_027460713
UniProt:
A0A6J2DWJ3
LinkDB
All DBs
Position
5:complement(76458972..76539008)
Genome browser
AA seq
1710 aa
AA seq
DB search
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQQQASSNSGS
EEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESDY
EPKNKVKSRKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEEDYDNDKRSSRRQATVNVSY
KEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGD
PNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS
WEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKGPTF
RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKREA
QRLSGAGGSKRRKARTKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDKLSESKSDSKER
SKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSE
REQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHA
IKKRQESQQNNDQNSNLNAQVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDR
HQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYKQESRYYSDREKHRKLDDHRSRDHRSNLE
GSLKDRSHSDHRSHSDHRLHSDHRASSEYTHHKSSRDYRYHSDWQMDHRASSSGPRSPLD
QRSPYGSRSPFEHSIEHKSTPEHTWSSRKT
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaacagtagtggagaatcaagccagtcg
gatgatgattctgggtcagcttcaggctcaggatctggttcaagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagtgactctgaatctggatctgaatcgggcagt
cagtcagagtctgaatcagatacttcccgagaaaacaaagtccaagcaaaaccaccgaaa
gttgatggagctgagttttggaaatctagccctagtattctggccgttcagagatctgca
atgctcaagaagcagcagcagcagcagcagcagcagcaggcttcatctaatagtggatca
gaggaggattcctccagcagtgaagattctgatgactcatcgaatgaggtcaaaaggaaa
aagcataaagatgaagattggcaaatgtctgggtcaggatctccatctcagtctggttca
gattcagaatctgaagaagaaagagataaaagcagttgtgatgaaacagaatctgattat
gagccaaaaaacaaagttaaaagcagaaaacctcaaaatagatctaaggcaaaaaatggg
aagaaaattcttggacaaaaaaagagacagattgattcatctgaggaggaagatgatgaa
gaagattatgataatgataaaagaagttctcgtcgccaagcaactgtcaatgttagctat
aaagaagatgaagaaatgaaaacagattctgatgatctactggaagtctgtggggaggat
gttcctcaacctgaggaagaggaatttgaaacaatagaacgttttatggattgtcggatt
gggagaaaaggagctactggtgctactacaaccatctatgcagttgaagcagatggtgac
ccaaatgcaggatttgaaaaaaacaaggaaccaggcgagatccaatatttaattaaatgg
aaaggatggtcccatattcacaatacttgggagacagaagaaacccttaagcagcagaat
gttagaggaatgaaaaaattggataattataagaaaaaagatcaggaaacaaaaagatgg
ttgaaaaatgcttctccagaagatgtggaatattacaattgccagcaggaactcacagat
gatctacacaaacagtatcaaatagtggaacgaataattgctcattccaatcagaagtca
gcagctggttatcctgattattattgcaagtggcagggccttccatactcagagtgcagc
tgggaggatggagctctaatttccaaaaagtttcaagcatgcatagatgagtattttagc
aggaatcagtcaaaaaccactccttttaaagattgcaaagtattaaaacaaaggccaaga
tttgtagccctaaagaagcaaccatcctatattggaggacatgagagtttagaattaaga
gattatcaactgaatggtttaaattggcttgctcactcttggtgcaaaggaaatagttgc
atacttgctgatgaaatgggccttggaaaaacaatacagacgatctcatttctgaactat
ttatttcatgaacatcaattatatggaccttttctgttagtagtaccactttccactctt
acttcctggcaaagggaaattcagacatgggcttctcaaatgaatgctgtggtttattta
ggtgacattaacagcagaaatatgataagaactcatgaatggatgcatccccagaccaaa
cggttaaaatttaatatacttttaacaacttacgaaattttattgaaggataaggcattc
cttggaggtctgaattgggcgtttataggtgtagatgaagcacatcgattaaagaatgat
gactctcttctgtataaaactttaatagactttaagtccaatcaccgtctccttattact
ggaactcctctacaaaactccctcaaagagctctggtctttgctacatttcattatgcca
gaaaagttttcttcctgggaagattttgaagaagaacatggaaaaggcagagaatatggt
tatgcaagcctccacaaggagcttgagccgtttctgttacgcagagttaaaaaagatgtg
gaaaaatctcttcctgccaaggttgagcagattttaagaatggaaatgagtgctttacag
aaacagtattacaaatggatattaactaggaattacaaagccctcagcaaaggttccaag
ggcagtacctcaggctttttgaacattatgatggagctaaagaaatgttgtaaccattgc
tacctcattaaaccaccagataataatgaattctataataaacaggaggccttacaacac
ttaatccgtagtagcggaaaattgattcttcttgacaaactgttaattcgcctaagagaa
cgaggcaatagagttcttattttttctcaaatggtgcggatgttagatatacttgcagaa
tatttgaaataccgtcaattcccctttcaaagattagatggatcaataaaaggggaactg
agaaaacaagctctagatcattttaatgctgaaggatcagaggatttctgctttttgctt
tccacaagagctggaggcctgggaattaatttagcctctgctgacactgttgttatattt
gattctgattggaatccacaaaatgatcttcaggcacaggctagagctcatcgaattggg
cagaagaaacaggtgaatatttatcgtctagttacaaagggatcagttgaagaggatata
cttgaaagggccaaaaagaagatggttttggatcaccttgtgattcagagaatggacaca
actgggaagacagtactacatacaggttctgccccctcaagttctactcctttcaataaa
gaagaattatcagccattttaaagtttggcgctgaggaactttttaaggaacctgaagga
gaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggctgaaactcat
gaaaacgaaccaggccctttaactgtaggagatgaattgctttcccagttcaaggttgcc
aacttttcaaatatggatgaggatgacattgagttggaaccagaaagaaattcaaagaat
tgggaagaaataattccagaagatcaaagaagacgattagaagaggaagaaagacaaaag
gaacttgaagaaatttatatgctcccaagaatgagaaactgtgcaaaacagattagtttt
aatggaagtgaagggaggcgcagtagaagtaggagatattccggatctgatagtgactcg
atctcagaaaggaaaaggccaaagaaacgtggaagaccacggactattcctcgagagaat
atcaaaggatttagtgatgcagaaattcggcggtttatcaagagttacaagaaatttggt
ggccctctggaaagattagatgcaattgctcgggatgctgaattagttgataagtcagag
acagacctcagacgactaggagaattggtgcataatggttgcattaaagctttaaaggat
aattcttcaggaacagaacgaacaggtggtagacttggaaaagtgaagggtccaacattc
cgaatatcaggtgtacaggtgaatgccaagcttgtcatctcccatgaagaagaattaata
ccattgcacaaatccattccttcagatccagaagaaagaaaacagtatactatcccatgc
cacacaaaggcagctcattttgatatagactggggcaaagaagatgattccaatttgtta
attggtatctacgaatacggatatggaagctgggaaatgattaagatggatcctgacctc
agtttaacacacaagattcttcctgatgatcctgataaaaaaccacaagcaaagcagttg
cagacacgtgcagactacctcatcaaattacttagtagagatcttgcaaaaagagaagct
cagagactttctggtgcaggagggtcaaagaggaggaaagcaagaactaagaagaataaa
gcaatgaagtctataaaagtgaaagaagaaataaagagtgattcttcacccctgccttca
gagaagtccgatgaagatgatgataagttgagcgaatccaagtctgatagcaaggaaaga
tccaagaaatcttcagtgtcagatgctccagttcatatcaccgcaagtggtgaaccagtt
cccatatctgaagaatctgaagagctagatcagaagacattcagcatttgtaaagaaagg
atgaggcctgtcaaagcagctttgaaacaacttgataggcctgaaaaaggcctttcagaa
agagaacaactggagcatactagacagtgtttaataaaaattggagaccatatcacagaa
tgtctgaaagagtatacaaatcctgaacaaatcaagcagtggagaaaaaacctgtggatt
tttgtatctaagtttacggagtttgatgcaagaaaattacataaattatataaacatgct
attaaaaaacggcaggaatctcagcaaaataatgaccagaacagcaacttgaatgctcaa
gtgattagaaatccagatgtggaaagattaaaagagaatacaaatcacgatgatagcagc
agggacagttattcatctgacagacacttatctcaatatcatgatcatcataaagaccga
catcagggagattcttacaaaaagagtgactctaggaaaagaccctattcttcttttagc
aatggtaaagatcatcgtgactgggatcattacaagcaggaaagcaggtattacagtgat
agagagaaacacagaaaactggatgatcacaggagtagagatcacaggtcaaatttggaa
ggaagtttaaaggatagatctcattctgatcatcgttctcattcagatcatcggttacat
tcagaccatcgggcaagttctgaatatacacaccataaatcttccagggattataggtat
cactcagattggcaaatggaccacagagcttccagtagtggccccagatcaccactagat
cagagatctccttatggctccagatctccatttgaacactcaattgaacacaaaagtaca
cctgagcatacctggagtagtcggaaaacataa
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integrated database retrieval system
