Zalophus californianus (California sea lion): 113929436
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Entry
113929436 CDS
T07874
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
113929436 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zca01009
]
113929436 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
zca04515
]
113929436 (PCDH1)
Protein phosphatases and associated proteins [BR:
zca01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113929436 (PCDH1)
Cell adhesion molecules [BR:
zca04515
]
Cadherins
Protocadherins
113929436 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
113929436
NCBI-ProteinID:
XP_027462155
UniProt:
A0A6J2E001
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All DBs
Position
5:complement(34464396..34490512)
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AA seq
1237 aa
AA seq
DB search
MDSRAGGRRCPEAAFLILEPARMGPLRPSPGPGGQRVLLPPLLLALLLLLAASPGHATRV
VYKVLEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN
TNIGSLFPIPVASDRDAGPNGVASYELQAGPEAQALFGLQVAEDQEGKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDKNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVANDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLDPEPAAKGLFSISPDTGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGDNARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREHQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHQLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSSKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTQECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPVGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacagcagggccggcggccggcgctgccccgaggcggccttcctgattctagagcct
gccaggatggggcccctgaggcccagcccaggccccggggggcaacgggtgctactgccc
cccttgctgctggcactgctgcttctgctggcggcatccccaggccatgccactcgggtg
gtgtacaaggtgctggaggaacagccacccaacaccctcattgggagccttgcagctgac
tatggttttccagatgtgggccacctgtacaaactagaggtaggcgccccatacctgcgg
gtggacggcaagacaggagacatcttcaccaccgagacgtctatcgaccgcgaggggctc
cgtgaatgccagaaccagctccctggtgagccttgcatcctggagtttgaggtgtctatt
acggacctggtgcagaatggcagtccccggctgttagagggccagatagaggtacaggac
atcaatgacaacacgcccaacttcgcctcgcccgtcatcacgctacccatccctgagaac
accaacatcggctcactcttccccatcccggtggcttctgaccgcgatgctggccccaac
ggtgtggcatcctatgagctgcaggccgggcccgaggcccaggcgctatttgggcttcag
gtggcagaggaccaggaggggaagcagccacagctcatcgtgatgggcaacctggaccgg
gagcgctgggattcctatgatctcaccatcaaggtgcaggacggtggcagccccccacgc
gccagcagtgccctgctgcgagtcactgtgcttgacaccaatgacaacgcccccaagttc
gagcggccctcctacgaggctgaactgtctgagaatagccccattggccactcggtcatc
caggtgaaggccaatgactcggaccaaggtgccaacgcggagatcgactacacattccac
caggcgcccgaggtggtgaggcgtcttctgcgactggacaagaacactggacttatcact
gtgcagggccctgtggatcgtgaggacctaagtaccctgcgcttctcggtgctcgccaag
gaccgaggcaccaaccccaagagtgcccgtgcccaagtggtggtgaccgtgaaggacatg
aacgacaatgcccccaccattgagatccggggcatagggttggtgacccatcaagacggg
atggctaatatctcggaggacgtggcagaggagacagccgtggccctggtgcaggtatct
gaccgagatgagggagagaatgcagctgtcacctgtgtggtggcaaatgacgtgcccttc
cagctacgccaggccagtgagacgggaagtgacagcaaaaagaaatacttcctgcagacc
accactccactcgactacgagaaggtcaaagactacaccatagagattgtggctgtggac
tctggcaaccccccgctctccagcaccaactcgctcaaggttcaggtggtggacgtcaat
gacaacgcccctgtcttcacccagagcgtcactgaggtcgccttcccagagaacaacaag
ccgggtgaagtggtcgccgaagtcaccgccagcgatgccgactcgggctctaatgcagag
ctggtttactctctggatcctgagccagccgccaagggcctcttcagcatctcgcctgac
actggagagatccgggtgaagacatcccttgatcgggaacaacgggacagctatgagtta
aaggtggtggcagctgaccggggcagccccagcctgcagggcacagccaccgtccttgtc
aatgtgctggactgcaatgacaatgaccccaagtttatgctgagtggctacaacttctca
gtgatggagaacatgccggcgctgagtccagtgggcatggtgactgtcattgatggggac
aaaggggacaatgcccgggtacagctcacggtggagcaggacaatggtgactttgttatc
caaaatggtacgggcaccatcctctccagcctgagctttgatcgggagcatcagagcacc
tataccttccagttgaaggcggtggacggtggcgtcccacctcgctcagcttacgtcggc
gtcaccatcaatgtgctggatgagaatgacaatgcgccctttatcaccgccccttccaac
acctcccaccagctgttgaccccccagacacgtcttggtgagacggtcagccaggtgaca
gctgaggacatcgactccggtgtcaatgctgagttgacctacagcatcgctggtggcaac
ccttacggactcttccagattgggtcacactcaggagccatcacccttgagaaggagatt
gagcggcgccaccacgggctgcaccgcctggtggtgaaagtcagtgaccgtggcaagccc
ccgcgctatggcacggccttggtccacctttatgtcaatgagaccctggccaaccgcaca
cttctggagaccctgctgggccacagcctggacacgccactggacatcgacatcgctggg
gatccagaatacgagcgctccaagcaacgtggcaacatcctctttggtgtggtggccggt
gttgtggccgtggccttgctcatcgccctggcagtgctcgtgcgttactgccggcagcgg
gaggccaagagtggctaccaggccggtaagaaggagaccaaggacctgtatgcccccaag
cccagcagcaaagcctccaagggaaacaaaagcaagggcaagaagagcaagtccccgaag
cccgtgaagccagtggaagatgaggacgaggcggggctgcagaaatccctcaagttcaac
ctgatgagcgatgcccccggagacagcccccgcatccacctgcccctcaactacccaccg
ggcagccctgacctgggccgccactaccgctctaactccccactgccttccatccagctg
cagccccagtcaccctcggcctccaagaagcaccaggtggtgcaggacctgccacccgca
aacacatttgtgggcactggtgacaccacgtccacgggctctgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgcgtcacc
ttctccgccaccagtcaggcccaagagctgcaggacccgtcccagcacagttactatgac
agtggcctggaggagtctgagacgccatccagcaaatcatcctcgggaccccgactcggt
cccctggctctgcctgaggatcactatgagcgcaccacccccgatggcagcataggagag
atggagcaccccgagaatgacctgcgccctttgcctgatgttgccatgacaggcacatgt
acccaggagtgcagcgagtttggccactctgacacgtgctggatgcctggccagtcgtct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgtgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cctgcagccacaccggcatctgcccagacagccaagcgcgagatctacctgtga
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