Zalophus californianus (California sea lion): 113929500
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Entry
113929500 CDS
T07874
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
zca
Zalophus californianus (California sea lion)
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zca03016
]
113929500
Enzymes [BR:
zca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
113929500
Transfer RNA biogenesis [BR:
zca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113929500
Prokaryotic type
tRNA splicing ligases
113929500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
113929500
NCBI-ProteinID:
XP_035583646
UniProt:
A0A6P9FE30
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All DBs
Position
5:18164340..18165872
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLVKINNNCWRIKKGFAPNLQVEGVFYVNDALEKLTFEELRNACRGGGVG
GFLPATKQIGSVAALPGIVHRSIGLPDVHSGYGFAVGNTAAFDMSDPEAVVSPGGVGFDI
NCGVRLLGTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCAMIHGGSRGLGHRVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGRDYLKGMAAAGNYAWVNRSSMTFSTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
PVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFXDVLDKLADMGIAIHVASPKLVMEEAPESYKNVTD
VVNTCHNAGISKKAIKLRPIAVIRG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtagttataatgatgagctgcagttcttggtaaagatcaataacaactgctgg
agaatcaagaagggcttcgcgcccaacctgcaggttgaaggagttttctacgtgaatgat
gctctggaaaaattaacgtttgaagaattaaggaatgcctgtcggggtggtggtgtcggt
ggcttcctgccagccacgaaacaaattggcagtgtagcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggttatgggtttgctgttgggaatacggca
gcctttgatatgagtgaccctgaagcagtggtatccccaggtggcgttggatttgacatc
aactgcggtgtgcgcttgctaggaaccaatttagacgaaagtgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgtcggggtgggatcaaaaggtgtc
attcccatgagtgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agggaaggctatgcctgggctgaggacaaggagcactgtgaggagtacggaaggatgttg
caggccgaccccaacaaggtctctgcgagggctaagaaaagaggacttcctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgcagctaagaaaatgggcatcgaccataagggacaggtgtgtgcgatgatccacggt
ggaagcagaggcctgggccaccgagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagattatagtcaacgaccggcagttggcttgtgctcggatcgcttcc
ccagagggtcgggactacctgaaggggatggcagctgctgggaactatgcctgggtcaac
cgctcctccatgaccttctcaacccgtcaggcctttgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgacgtttctcacaatattgccaaagtagagcag
cctgtggtggacggaaaggaacggacactgttggttcacaggaagggatccacccgagct
ttcccccctcaccatcccctcattgctgttgattaccaactcactggacaacccgtgctc
atcggcggcaccatgggcacttgtagttacgttcttactggcactgaacagggcatgact
gagacctttggaacaacttgtcatggagcgggccgtgcactgtcccgagcaaaatctcgt
cgtaatttagatttttaggatgtcttggacaagctggcagatatgggaatcgcaatccac
gttgcctcacccaaattggttatggaagaggctcccgagtcctataagaacgtgacagat
gtggtgaacacctgccacaatgctggaatcagcaagaaggccattaaactgagaccgatt
gccgtgatcagaggatag
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