Zalophus californianus (California sea lion): 113929945
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Entry
113929945 CDS
T07874
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03440
Homologous recombination
zca03450
Non-homologous end-joining
zca04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113929945 (RAD50)
03450 Non-homologous end-joining
113929945 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
113929945 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zca03032
]
113929945 (RAD50)
03400 DNA repair and recombination proteins [BR:
zca03400
]
113929945 (RAD50)
DNA replication proteins [BR:
zca03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
113929945 (RAD50)
DNA repair and recombination proteins [BR:
zca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
113929945 (RAD50)
BRCA1-C complex
113929945 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
113929945 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
DUF2703
AAA_29
Motif
Other DBs
NCBI-GeneID:
113929945
NCBI-ProteinID:
XP_027462997
UniProt:
A0A6J2E7T5
LinkDB
All DBs
Position
5:26066052..26157842
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSRSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITSKEAQLTSSKEI
VKSYENELDPLKNRLKEIEQNLLKITRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKSNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIRARDSLIQSLATQLELDGFERGPFNERHIKNFHKLVRERQDREAEIASQLMNDFTE
KETLKQKQIDEIRDKKTGLGRIIELKSEILTKKQNELRNVKYELQQLEGSSDRILELDQE
LSKAERELSKAEKNSNVEALKTEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINNELKRKEEQLSTYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPVRQSIIDLKEKDIPELRNKLQNVNRDIQHLKNDIEEQETLLGTIMP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGLDLDRTVQQVNQEKQEKQHKLD
TVSSKMELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
LFREIKDAKEQLSPLETTLEKLQQEKEELINKKNKSNKIAQDKMNDTKEKVKTIHAYMKD
IENYIQDGKDDYKKQKENELNKVIAQLSECERHKEDINKEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQKLEEKIDNIKRNHSLAIGRQKG
YEEEIIHFKRELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLALALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtgcggagttttggaatagaggacaaa
gataagcaaattatcacttttttcagccccctcacaattttggttggacccaatggggca
gggaagacgaccatcattgaatgtctaaaatatatttgtactggtgattttcctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcaagaaacagatgttagagcc
cagattcgtctgcagtttcgtgatgtcaatggagaacttatagctgtacagaggtctatg
gtgtgtactcagaaaagcaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaagcatggtgagaaggtcagtctcagctctaagtgtgcagaaattgaccgagagatg
ataagttctcttggggtttccaggtctgtgctaaataatgtcattttttgtcaccaagaa
gactctaattggcctttaagtgaaggaaaggctctgaagcaaaaatttgatgagattttt
tcagcaacaaggtacataaaagccttggaaacacttcggcaggtacgacagacacaaggt
cagaaagtaaaagaatgtcaaacggaactaaaatatttgaagcaaaataaggaaaaagct
tgtgagatacgtgaccagattactagtaaggaagcccagttaacatcctcaaaggaaatt
gtcaaatcctatgagaacgaacttgatccattgaagaatcgtctaaaagaaattgaacaa
aatctccttaaaataacgagacttgacaatgaaattaaagccttggatagccggaagaag
caaatggagaaagataatagtgaactggaacagaaaatggagaaggtttttcaagggact
gatgagcaactaaatgatttatatcacaatcaccagagaacagtaagagagaaagaaagg
agactggtagactgtcagcgtgaactggaaaagtcaaataaagaatcaaggcttctcaat
caggaaaaatcagaattgcttgttgagcagggtcgtctgcagctacaagcggatcgccat
caagaacatatccgagctagagattcattaattcagtctttggcaacacagctagaattg
gatggctttgagcgtggaccattcaatgaaagacatattaaaaattttcacaaacttgtg
agagagaggcaagacagggaagcagaaattgccagccaactgatgaatgactttacagaa
aaagagactctgaaacaaaaacagatagatgagataagggataagaaaactggactggga
agaataattgagctaaaatcagaaatcctaactaagaagcagaatgagctgagaaatgtg
aagtatgaattacagcagttggaaggatcttcggacaggattcttgaactggaccaggag
ctctcaaaagctgaacgtgagctaagcaaagctgagaaaaacagcaatgtagaagctcta
aaaacagaagtaataagtcttcaaaatgagaaagcagacctagacaggaccctgcgtaag
ttggaccaggaaatggagcagttaaaccatcatacaacaacacgcacccagatggaaatg
ctgaccaaagacaaagctgacaaagatgaacaaatcagaaaaataaaatctcgacacagt
gatgaattaacttcattgttaggatattttcccaacaaaaaacagcttgaagactggctt
catagtaaatcaaaagaaattaatcagaccagggacagacttgccaaattgaacaaagaa
ctagcttcagctgagcaaaataaaaatcatataaataatgaactaaaaaggaaagaagag
cagttgtccacttatgaagacaagctgtttgatgtttgtggtagccaggattttgaaagt
gatttagacaggcttaaagaagaaattgaaaaatcctcaaaacagcgagccatgctggct
ggagccacagcagtttactcccaattcattactcagctaacagatgaaaaccagtcatgt
tgccctgtctgtcagagggtttttcagacagaagctgaattacaggaagtcatcagtgat
ttgcagtctaagctgcggcttgctccagataaactgaagtcaacagaatctgaactaaag
aaaaaagaaaagcggcgtgatgaaatgctgggacttgtccccgtgaggcaaagtataatt
gatttgaaggagaaggacataccagaattaagaaacaaactgcagaatgtcaatagagac
atacagcacttaaagaatgacatagaggaacaggaaacactcttgggcacaataatgcct
gaagaagaaagtgctaaagtctgcctgacagatgttacaattatggagaggttccagatg
gaacttaaagatgttgaaagaaaaattgcacaacaagcagctaagctgcaaggactagat
ttggatagaactgttcaacaagtaaaccaggaaaaacaagaaaagcaacacaaattagat
acagtttccagtaagatggaattgaatcgtaagcttatacaggaccagcaggaacagatt
caacacctaaaaagtacaacaaatgaacttaaatcagagaaacttcagatatctactaat
ttacaacgtcgtcagcagctagaggagcagactgtggaattatccactgaagttcagtcc
ttattcagagagataaaggatgctaaagagcagttaagccctttagaaacaacattggag
aagttgcagcaggaaaaagaagaattaatcaacaaaaaaaataaaagcaacaaaatagcc
caggataaaatgaatgataccaaagaaaaggttaaaactattcatgcttatatgaaagac
attgagaattatattcaagatgggaaggatgactataagaagcaaaaagaaaacgaactt
aataaagtaatagctcaactaagtgaatgcgagagacacaaagaagatataaataaagaa
atgggaatcatgagacaagatattgatacacagaagatacaagagagatggctacaggat
aaccttactttaagaaaaagaaatgaggaactaaaagaagttgaagaagaaagaaaacag
catttgaaggaaatgggtcaaatgcaggttttacaaatgaagaatgaacatcagaagttg
gaagaaaaaatagacaatataaaaagaaatcacagtttggcaatagggcgacagaaaggt
tatgaggaagaaattattcattttaagagagaacttcgagaacctcagtttcgggatgcg
gaggaaaagtacagggaaatgatgattgttatgagaacaacagagcttgtgaacaaggat
ctggacatttattataagacccttgatcaagcaatcatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgacctttggcgaagtacctatcgtggacaagatatt
gaatacatagaaattcggtccgatgccgatgaaaatgtatcagcctctgataaaaggcgg
aattataactaccgcgtggtgatgctcaagggagacacagccttggatatgcgaggacga
tgcagtgctggacaaaaggtattagcctcactcatcattcgcctggccttggctgaaacg
ttctgcttgaactgtggcatccttgccttggatgagccaacaacaaatcttgaccgagaa
aacattgaatctcttgcacttgctcttgttgagataatcaagagtcgctcacagcagcgt
aacttccagcttctggtcatcactcatgatgaagattttgtggagctcttaggccgttct
gaatatgtggagaaattctacaggattaagaagaacatcgatcagtgctcagagattgtg
aaatgtagtgttagctccctgggttcttatgttcattaa
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integrated database retrieval system
