Zalophus californianus (California sea lion): 113933217
Help
Entry
113933217 CDS
T07874
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113933217 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zca03019
]
113933217 (PARN)
Enzymes [BR:
zca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113933217 (PARN)
Messenger RNA biogenesis [BR:
zca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113933217 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
T6PP_C
NCBP3
Motif
Other DBs
NCBI-GeneID:
113933217
NCBI-ProteinID:
XP_027468911
UniProt:
A0A6J2EKS1
LinkDB
All DBs
Position
10:complement(81132080..81291143)
Genome browser
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYVTKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVNEEERKRKEQQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
CCPLPVDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHKEKQIKRKWTEDTWQEVERKRLN
TQCISYALQNHYYHTNSLTATSAVGKRNLSPSPAEADLEARISGDISDPELEQTESCAEP
LSEGRKKAKKLKRMKKDLSPAGGIPDSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
acggcattgacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgaccacacagat
tcaaagtatgtaacaaagtcatttaacttctatgtattcccgaaacccttcaatagatcc
tcaccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaatcccatatttaaatcaggaagaggaaaga
cagttaagagaacagtatgatgaaaaacgtctgcagtccaatggcgcaggaactctgtct
tatgtatcaccaaatacttccaaatgtcctgtgacaattcctgaagaccagaagaagttt
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcacgttgacactttagaaactgaaaagaaagagcgctacatcgtc
atcagcaaagtaaatgaagaagagcgtaagaggaaggagcagcagaaactcgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgccaattcg
ggaaaactcgttattggacacaacatgctcttggatgtcatgcacactgttcatcagttc
tgctgccctctgcctgtggacctaaatgagtttaaggagatgacgacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagacgcctttcaaccctcctaaagtt
gaaagtgcagaaggctttccaagttatgacacagctactgaacagctccacgaggcaggc
tatgatgcttatatcacagggctgtgcttcatctccatggcgaactacctaggttctttc
cttagccctccaaaaattcatgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
caaccgaaacgtgatcatgttctccatgtgactttccccaaagagtggaaaaccagcgac
ctttaccagctttttagtgcctttggtaacattcagatatcctggattgatgacacatca
gcatttgtttctctcagccagcccgaacaagtgcagattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctacgccgaatatgtggggaaaaaacacaaggagaag
cagatcaagagaaagtggacagaagatacttggcaggaggttgagagaaaacggttaaac
actcagtgcatatcctatgctctgcagaatcactactaccacaccaatagtcttacagcg
accagtgccgtaggaaagagaaacctgagtcccagcccagcagaagctgacttggaggcc
agaatatcgggggatatttctgaccctgagctcgaacagacagagtcctgtgcagaaccc
ctctccgagggaaggaaaaaggccaagaaattaaaaagaatgaagaaggacctttcacca
gcaggaggcatccccgacagccctgccaagctcttcgaggttcccgacacgtggtaa
DBGET
integrated database retrieval system
